Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2890g00009 ATGAAACGCCCGATCGATGACATCGTTGTGCCCTTGGCTTCTTCGGCTGCCTCCTCCGCTGCTGCGGCTCCTTCGAAACCGGTGTTCTTAACGAAAGCTCAACGTGAACAATTGGCTCTTCAGCGACGCCAAGAAGAAATCGCCGAACAAAGACGCCGTCAGGAACAACTGCTTTCTCGGAACCGCCCATCCGACCCGAACTCTGATTCTAAACCCTCCGATTCCGATCGACGGGACCGGGACCGGGACCGGGAACGGGACCGCGACCGCGACCGCGACCGGGACCGGGACCGGGACCGGGATAGAGAGCGGGACCGTGAGCGCGAGCGTGAGCGAGATAGGGCTCGGGATCGGGACCGTGAAACAGAACGCAGGAACCGTGAGAGGGAGCGTGAAGAGGAGGCTAGGGCCCGCGAGCGTGCTCGGACGGAGAAATTGGCAGAGCGGGAGCGTGAGAAAGAGCTTGAAGCGATCAAGGAGCAGTATCTTGGCTCGAAGAAGCCTAAGAAGCGGGTTATCAAACCCAGTGAGAAGTTTCGGTTTTCCTTCGATTGGGAGAACACGGAGGATACTTCTCGTGACATGAACATTCTTTACCAGAATCCTCACGAAGCGCAGCTTCTCTTTGGTCGTGGCTTTCGTGCTGGCATGGACCGGCGTGAGCAGAAGAAGCTTGCTGCTAAGAATGAGAAGGAGATGCGTGAACAGATCCGGAAGAAGGAGGGCGTGGAGGAGAAACCCGAAGAGGCTGTTGCACAACGGCGAAAGGAGGCTGCTGCTGACCTCTATGACACCTTTGACATGAGAGTTGACCGCCACTGGAGCGAGAAGAAGCTTGAGGAGATGACTGAGAGGGATTGGCGTATATTCAGGGAGGATTTCAATATTTCCTACAAGGGTTCTAAAATTCCTCGTCCAATGCGTAGCTGGACCGAGAGTAAGTTGACTCTTGAGCTATTGAAGGCGGTTGAGAAGGCTGGGTACAAAACCCCTTCTCCCATTCAGATGGCTGCCATCCCTCTTGGCCTTCAGCAGCGTGATGTCATTGGCGTTGCCGAGACAGGTTCAGGGAAGACCGCTGCTTTTGTGCTTCCCATGCTGAGTTACATCACAAGGCTTCCTCCCATGAGTGAAGAGAATGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCTACCCGTGAACTTGCACAGCAGATTGAGGATGAGACCGTGAAGTTTGCCCAGTATCTTGGAATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAAGAGCAAGGTTTTAAAATAAGGCAAGGTTGTGAAATTGTAATTGCCACTCCTGGTCGATTGATTGATTGCTTGGAGAGGCGTTATGCTGTCCTAAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGGTTTGAGCCTCAAGTAATGGGTGTCCTGGATGCAATGCCTTCCAGCAATCTGAAACCAGAAAATGAAGATGAAGAGCTTGATGAGAAGAGGATTTACAGAACTACTTATATGTTCAGTGCCACCATGCCTCCTGCTGTTGAGCGGCTTGCTAGGAAATACCTGAGGAACCCTGTTGTGGTAACCATAGGCACTGCAGGAAAGGCTACTGATTTGATCAGCCAGCATGTGATTATGATGAAGGAATCTGAAAAGTTTTTCAAACTGCAACGGCTGCTTGATGAACTTAATGACAAGACAGCAATTGTATTCGTTAACACTAAGAAAAATGCTGACATGGTTGCAAAGAATTTGGATAGGGATGGCTACCGTGTAACCACTCTGCATGGTGGCAAGTCACAGGAGCAGAGAGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTCTTGGTTGCTACTGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCATGTCATAAACTATGACATGCCTGGGAATATTGAGATGTACACACATCGTATTGGACGTACTGGTCGTGCTGGGAAGACAGGTGTTGCTACGACGTTCCTGACTCTTCATGACACTGATGTCTTTTATGACCTCAAACAGATGCTTATACAGAGTAATAGTCCTGTCCCTCCTGAATTGGCCAGACATGAGGCTTCAAAATTCAAGCCAGGAACTATTCCTGATAGACCACCTAGACGGAATGACACCGTATTTGCACATTGA 2187 0.5011 MKRPIDDIVVPLASSAASSAAAAPSKPVFLTKAQREQLALQRRQEEIAEQRRRQEQLLSRNRPSDPNSDSKPSDSDRRDRDRDRERDRDRDRDRDRDRDRDRERDRERERERDRARDRDRETERRNREREREEEARARERARTEKLAEREREKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEAVAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWTESKLTLELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFFKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDRDGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2890g00009 728 Pfam DEAD/DEAH box helicase 333 523 IPR011545 GO:0003676|GO:0005524
Pral2890g00009 728 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724
Pral2890g00009 728 MobiDBLite consensus disorder prediction 703 728 - -
Pral2890g00009 728 Coils Coil 220 246 - -
Pral2890g00009 728 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 240 705 - -
Pral2890g00009 728 MobiDBLite consensus disorder prediction 41 59 - -
Pral2890g00009 728 MobiDBLite consensus disorder prediction 696 728 - -
Pral2890g00009 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 687 IPR027417 -
Pral2890g00009 728 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 561 705 IPR001650 -
Pral2890g00009 728 Gene3D - 539 726 IPR027417 -
Pral2890g00009 728 CDD SF2_C_DEAD 546 675 - -
Pral2890g00009 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 487 IPR027417 -
Pral2890g00009 728 FunFam probable ATP-dependent RNA helicase DDX23 539 727 - -
Pral2890g00009 728 Gene3D - 269 538 IPR027417 -
Pral2890g00009 728 CDD DEADc_DDX23 319 535 - -
Pral2890g00009 728 MobiDBLite consensus disorder prediction 41 171 - -
Pral2890g00009 728 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 463 471 IPR000629 -
Pral2890g00009 728 Coils Coil 112 149 - -
Pral2890g00009 728 MobiDBLite consensus disorder prediction 225 251 - -
Pral2890g00009 728 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 534 IPR014001 -
Pral2890g00009 728 FunFam probable ATP-dependent RNA helicase DDX23 269 538 - -
Pral2890g00009 728 SMART ultradead3 327 549 IPR014001 -
Pral2890g00009 728 MobiDBLite consensus disorder prediction 67 167 - -
Pral2890g00009 728 SMART helicmild6 585 666 IPR001650 -
Pral2890g00009 728 Coils Coil 30 60 - -
Pral2890g00009 728 Pfam Helicase conserved C-terminal domain 561 666 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2890g00009 Pral-Chr2890 70858 73451 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2890g00009 306 688 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 7.14e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2890g00009 K12858 - gmx:100792810 1118.22