Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2890g00007 ATGGCTGCCATCCCTCTTGGCCTTCAGCAGCGTGATGTCATTGGCGTTGCCGAGACAGGTTCAGGGAAGACCGCTGCTTTTGTGCTTCCCATGCTGAGTTACATCACAAGGCTTCCTCCCATGAGTGAAGAGAATGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCTACCCGTGAACTTGCACAGCAGATTGAGGATGAGACCGTGAAGTTTGCCCAGTATCTTGGAATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAAGAGCAAGGTTTTAAAATAAGGCAAGGTTGTGAAATTGTAATTGCCACTCCTGGTCGATTGATTGATTGCTTGGAGAGGCGTTATGCTGTCCTAAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGGTTTGAGCCTCAAGTAATGGGTGTCCTGGATGCAATGCCTTCCAGCAATCTGAAACCAGAAAATGAAGATGAAGAGCTTGATGAGAAGAGGATTTACAGAACTACTTATATGTTCAGTGCCACCATGCCTCCTGCTGTTGAGCGGCTTGCTAGGAAATACCTGAGGAACCCTGTTGTGGTAACCATAGGCACTGCAGGAAAGGCTACTGATTTGATCAGCCAGCATGTGATTATGATGAAGGAATCTGAAAAGTTTTTCAAACTGCAACGGCTGCTTGATGAACTTAATGACAAGACAGCAATTGTATTCGTTAACACTAAGAAAAATGCTGACATGGTTGCAAAGAATTTGGATAGGGATGGCTACCGTGTAACCACTCTGCATGGTGGCAAGTCACAGGAGCAGAGAGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTCTTGGTTGCTACTGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCATGTCATAAACTATGACATGCCTGGGAATATTGAGATGTACACACATCGTATTGGACGTACTGGTCGTGCTGGGAAGACAGGTGTTGCTACGACGTTCCTGACTCTTCATGACACTGATGTCTTTTATGACCTCAAACAGATGCTTATACAGAGTAATAGTCCTGTCCCTCCTGAATTGGCCAGACATGAGGCTTCAAAATTCAAGCCAGGAACTATTCCTGATAGACCACCTAGACGGAATGACACCGTATTTGCACATTGA 1182 0.4543 MAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFFKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDRDGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2890g00007 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 352 IPR027417 -
Pral2890g00007 393 SMART ultradead3 1 214 IPR014001 -
Pral2890g00007 393 MobiDBLite consensus disorder prediction 361 393 - -
Pral2890g00007 393 FunFam probable ATP-dependent RNA helicase DDX23 204 392 - -
Pral2890g00007 393 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 128 136 IPR000629 -
Pral2890g00007 393 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 4 199 IPR014001 -
Pral2890g00007 393 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 226 370 IPR001650 -
Pral2890g00007 393 Pfam DEAD/DEAH box helicase 2 188 IPR011545 GO:0003676|GO:0005524
Pral2890g00007 393 MobiDBLite consensus disorder prediction 368 393 - -
Pral2890g00007 393 Gene3D - 1 203 IPR027417 -
Pral2890g00007 393 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 370 - -
Pral2890g00007 393 CDD DEADc_DDX23 1 200 - -
Pral2890g00007 393 SMART helicmild6 250 331 IPR001650 -
Pral2890g00007 393 Gene3D - 204 391 IPR027417 -
Pral2890g00007 393 CDD SF2_C_DEAD 211 340 - -
Pral2890g00007 393 Pfam Helicase conserved C-terminal domain 226 331 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2890g00007 Pral-Chr2890 60402 73451 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2890g00007 5 354 Eukaryotic Initiation Factors Gene Family AT1G72730 33.889 1.91e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2890g00007 K12858 - gmx:100792810 764.607