Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2886g00003 ATGGATTCATTGGAGCCAGAAGGAAATGGATCGGAGGGCCCTCTGCCGCCGCCACCTCCTGTCCCACCACATGTTGTTCCATTAATAGCAGATCAAGGACTTCCTCTGGAACCTGTCAAGAAGGTTTCCCGTGTTCCAATTGCCAGACGAGGATTGGGATCCAGAGGAAGTAAACTACCTCTTTTAACTAATCACTTCAAAGTCAATGTTAAGAACAACGATGGCTATTTCTTCCACTACAGTGTGTCATTTTCTTACGAAGATGGTCGCCCTGTAGAAGGCAAGGGTGTGGGAAGAAAAATCATTGACAGGGTGCAGGAGACGTATGACTCTGAGTTAGCAGGGAAGAACTTCGCCTATGACGGGGAGAAGAGTTTATTTACCGTTGGCCCTCTTCCTCGAAACAAGCTTGAATTCACTGTTGTCTTGGAGGATCTCATATCAAACAGGAATAATGGCAATTGCAGCCCTGATGGTCGCGGGAGTCCCAATGAGAGTGACAAGAAGAGGATGCGACGCCCAAATCGTTCCAAAACATTTAAAGTGGAGATCAGTTATGCTGCTAAAATCCCTATGCAGGCTATCACTAATGCACTGCGTGGTCAAGATTCTGAAAATTTTCAAGAAGCCATCAGAGTGCTTGATATCATATTAAGGCAACATGCTGCCAAGCAAGGGTGTTTACTTGTTCGCCAATCTTATTTCCACAATGATCCAAGGAGTTTTGCTGACGTTGGAGGTGGGGTTTTAGGCTGCAGAGGATTCCATTCAAGTTTCAGAACTACACAAAGTGGTTTATCACTTAATATAGATGTATCTACTACCATGATCATACAGCCTGGGCCCGTGGTGGACTTTTTAATTGCCAACCAGAACGTGCGAAATTCTCATTCAATTGACTGGGCAAAGGCCAAAAGGACGCTAAAAAATCTGAGGATTAAGACAAGTCCAGCCAATCAAGAGTACAAGATAACGGGGCTTAGCGATCTCCCATGCAGAGAGCAGACGTTTTCTCTGAAAAGCAAAAGTGGAAAGGATAGCATTGATGCTTCTGAGGAAGTGACTGTTTATGATTATTTTGTTAATCATCGTAAGATAGATCTCCGTTCTTCTGCTGATCTTCCGTGTATCAATGTTGGGAAACCAAAACGTCCTACTTTCTTCCCACTTGAGCTTTGCTCTCTGGTATCCCTACAACGGTATACAAAATCACTGTCAACCCTTCAAAGGGCTTCGCTGGTGGAGAAATCTAGGCAGAAGCCCCAAGAGAGAATGAGAGTTTTATCTGATGCTTTAAAAAGCAACAAGTATAATTCTGAACCCATGCTTCATAACTGTGGGGTTTCAATAAGCAATAGCTTTACTGAAGTGGAGGGTCGCGTTTTGCAGGCTCCAAGGCTGATGTTTGGTGATCGGGAGGATAACCCAAGAAATGGGAGATGGAACTTGAATAATAAGAAAATAGTGCAGCCATCGAGGATAGAAAAATGGGCTGTGGTGAACTTTTCTGCCCGTTGTGATACACGTGGGCTTGTGCGAGATCTGATTAAATGTGGAGGAGTGAAAGGAGTTCTCATAGAAGAACCATTTTGTGTCTTTGAAGAAAAACCTCAGTTTAGACGTGGCCCACCTGTGATAAGAGTGGAGAAAATGTTTGAAGAGATCCAATCGAAACTTCCTGGGCCCCCCAATTTCCTTCTTTGTCTTCTTCCTGAGCGGAAAAACTCTGACCTTTATGGTCCATGGAAACGGAAGAATCTTTCTGACTTTGGAGTGGTCACTCAGTGCATAGCTCCTACAAGGGTCAATGACCAATATCTCACTAATGTTCTGATGAAGATCAATGCTAAGCTTGGTGGTCTGAATTCAATGCTATCAATTGAACATACACCGTCAATTCCTGTTGTTTCCAAAGACCCCACCATCATTCTTGGCATGGACGTGTCACACGGTTCACCAGGACAGTCTGATATCCCTTCAATTGCAGCGGTAGTCAGCTCTAGACAGTGGCCTCTAATATCAAAGTATAGGGCCTGTGTCCGTACCCAGTCTCCAAAGGTTGAAATGATCGATAATTTGTTCAAGCCGGTGTCTGGGAATGAAGATGAAGGCATCATCAGGTCGATATTGCTTGACTTCTATGCAACTTCTAAGAGGAAACCACAAAATATAATAATATTCAGGGATGGGGTAAGCGAATCACAGTTCAATCAAGTATTGAACATTGAACTCAATCAAATCATTGAGGCCTGTAAATTTCTTGATGATCAGTGGTGTCCCAAATTTGTGGTAATTGTTGCCCAGAAAAACCACCACACAAAGTTTTTCCAGCCTTCATCTCCAGACAATGTTCCCCCAGGAACCGTTATTGATAATAAAATATGTCATCCACGGAACTATGACTTTTATTTATGTGCACATGCTGGAATGATCGGAACTACCAGGCCGACGCATTACCATGTTCTGTTAGATGAGATTGGTTTCTCGCCTGATGATCTGCAGGCACTTGTGCATTCGTTATCATACGTGTATCAGCGGAGCACCACTGCCATATCTGTTGTTGCTCCAATATGCTATGCGCACTTGGCTGCAACTCAGATGGGACAGATGATCAAATTTGAGGACAAGTCTGAGACTTCTTCGAGCCATGGCGGGCTGTCATCTGCTGGACCGGTTCCTGTGCCCCAGTTGCCCAAATTGCAGGATAACGTCCGCAACTCCATGTTCTTTTGTTGA 2736 0.4415 MDSLEPEGNGSEGPLPPPPPVPPHVVPLIADQGLPLEPVKKVSRVPIARRGLGSRGSKLPLLTNHFKVNVKNNDGYFFHYSVSFSYEDGRPVEGKGVGRKIIDRVQETYDSELAGKNFAYDGEKSLFTVGPLPRNKLEFTVVLEDLISNRNNGNCSPDGRGSPNESDKKRMRRPNRSKTFKVEISYAAKIPMQAITNALRGQDSENFQEAIRVLDIILRQHAAKQGCLLVRQSYFHNDPRSFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIANQNVRNSHSIDWAKAKRTLKNLRIKTSPANQEYKITGLSDLPCREQTFSLKSKSGKDSIDASEEVTVYDYFVNHRKIDLRSSADLPCINVGKPKRPTFFPLELCSLVSLQRYTKSLSTLQRASLVEKSRQKPQERMRVLSDALKSNKYNSEPMLHNCGVSISNSFTEVEGRVLQAPRLMFGDREDNPRNGRWNLNNKKIVQPSRIEKWAVVNFSARCDTRGLVRDLIKCGGVKGVLIEEPFCVFEEKPQFRRGPPVIRVEKMFEEIQSKLPGPPNFLLCLLPERKNSDLYGPWKRKNLSDFGVVTQCIAPTRVNDQYLTNVLMKINAKLGGLNSMLSIEHTPSIPVVSKDPTIILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSPKVEMIDNLFKPVSGNEDEGIIRSILLDFYATSKRKPQNIIIFRDGVSESQFNQVLNIELNQIIEACKFLDDQWCPKFVVIVAQKNHHTKFFQPSSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTTRPTHYHVLLDEIGFSPDDLQALVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQMIKFEDKSETSSSHGGLSSAGPVPVPQLPKLQDNVRNSMFFC 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2886g00003 911 CDD Piwi_ago-like 441 866 IPR045246 -
Pral2886g00003 911 Gene3D paz domain 274 401 - -
Pral2886g00003 911 FunFam Protein argonaute 7 275 401 - -
Pral2886g00003 911 ProSiteProfiles PAZ domain profile. 322 397 IPR003100 GO:0005515
Pral2886g00003 911 ProSiteProfiles Piwi domain profile. 565 872 IPR003165 GO:0003676
Pral2886g00003 911 Pfam N-terminal domain of argonaute 59 218 IPR032474 -
Pral2886g00003 911 MobiDBLite consensus disorder prediction 875 899 - -
Pral2886g00003 911 Pfam Mid domain of argonaute 475 509 IPR032473 -
Pral2886g00003 911 Pfam Piwi domain 566 872 IPR003165 GO:0003676
Pral2886g00003 911 Pfam PAZ domain 284 413 IPR003100 GO:0005515
Pral2886g00003 911 SUPERFAMILY PAZ domain 275 438 IPR036085 GO:0005515
Pral2886g00003 911 Pfam Argonaute linker 1 domain 230 278 IPR014811 -
Pral2886g00003 911 MobiDBLite consensus disorder prediction 152 175 - -
Pral2886g00003 911 MobiDBLite consensus disorder prediction 1 24 - -
Pral2886g00003 911 Gene3D - 632 911 IPR036397 GO:0003676
Pral2886g00003 911 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 42 874 - -
Pral2886g00003 911 FunFam Protein argonaute 3 633 911 - -
Pral2886g00003 911 Gene3D - 461 626 - -
Pral2886g00003 911 SMART DUF1785_2 228 280 IPR014811 -
Pral2886g00003 911 CDD PAZ_argonaute_like 280 396 - -
Pral2886g00003 911 Pfam Argonaute linker 2 domain 423 469 IPR032472 -
Pral2886g00003 911 SUPERFAMILY Ribonuclease H-like 549 870 IPR012337 -
Pral2886g00003 911 SMART Piwi_a_2 565 872 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2886g00003 Pral-Chr2886 9477 16670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2886g00003 49 911 Eukaryotic Initiation Factors Gene Family AT5G43810 35.288 8.08e-165 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2886g00003 K11593 - qsa:O6P43_020873 1493.4