Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2885g00013 ATGGCTCTCGAGGCTGTGGTATTCCCACAAGATCCTTTCAACTATAGTTATATGTCAGGACTTGGCTATGGTTTAGAAGCAGAGCAAGAGAGAGGCTTCGTGGGGATGACAGGCAATGTGAATTGGGATTATTCTTCGGTGTTGCAAGATGTGAAGGAGTCATGGGACAGCTCAAACTCGTCTCCTCAAGAATCTGTGTCCCCTGCGGCTTCCACAGGACGTCGCAAACGACGTCGCACCAAGACAACCAAGAACCAGGAGGAAATCGAGAGCCAGAGGATGACCCACATTGCCGTGGAGCGTAATCGCCGCAAGCAGATGAATGAGTACTTGACCGTGCTCCGATCTTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCCTCTATAATTGGAGGCGCCATTAACTTCGTAAAGGAGCTGGAACAACATCTACAGTCGATGCAGGGCCAAGCCAAAACAGGGACCCGCGCAGAACACAGCCCCTTTGCCGGTTTCTTCTCGTTTCCACAGTACACAACACCTGCAACTCAGGGCAGCACCGGCTGTACGGCCGCCAACGACGTCGTGATGGGACAAAACCAGGAGGTCGGGGCCGCCGACATAGAAGTGAGCTTGGTGGACAGCCACGCGAACCTCAAGATACTCTCCAGGAAACGGCCGGGCCAGCTTGTGAAGATGGTTGTTGGGCTTCAGAGTCTCAGACTCTGCATTCTTCACCTCAACGTTACTACAACTCTCGACGATATGGTTCTGTACTCTGTTAGCGTTAAGGTTGAGGACGAGAGTCAGTTGAACACAGTAGATGAAATTGCAGCTGCTGTGAATCAACTAATGCGCAGAATTCAAGAAGAAGCTGCTTTCTGTTGA 873 0.5109 MALEAVVFPQDPFNYSYMSGLGYGLEAEQERGFVGMTGNVNWDYSSVLQDVKESWDSSNSSPQESVSPAASTGRRKRRRTKTTKNQEEIESQRMTHIAVERNRRKQMNEYLTVLRSLMPSSYVQRGDQASIIGGAINFVKELEQHLQSMQGQAKTGTRAEHSPFAGFFSFPQYTTPATQGSTGCTAANDVVMGQNQEVGAADIEVSLVDSHANLKILSRKRPGQLVKMVVGLQSLRLCILHLNVTTTLDDMVLYSVSVKVEDESQLNTVDEIAAAVNQLMRRIQEEAAFC 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2885g00013 290 CDD bHLH_AtFAMA_like 94 160 - -
Pral2885g00013 290 PANTHER MAX DIMERIZATION, MAD 57 287 - -
Pral2885g00013 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Pral2885g00013 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 156 IPR036638 GO:0046983
Pral2885g00013 290 MobiDBLite consensus disorder prediction 54 70 - -
Pral2885g00013 290 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983
Pral2885g00013 290 SMART finulus 97 148 IPR011598 GO:0046983
Pral2885g00013 290 MobiDBLite consensus disorder prediction 54 89 - -
Pral2885g00013 290 Gene3D - 76 158 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2885g00013 Pral-Chr2885 27295 28558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2885g00013 1 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.191 2.17e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2885g00013 HLH 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2885g00013 - - gmx:100797856 320.857