Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2885g00012 ATGGCGAGGATACACAGGAAACTCTTACCAGCATTATCCAGTACAAACGAAACCAATGTAAACGAAACACAAGATTGTCCTGAATTTTGCGATCCAGCTTGCCCTTACAGCTGCTATTCCTTCCCAGACTACTACTTCCCACCACCTCCGCCTCCTCCGCCTCCCTTTTCGGCCACTGATCATTCCAGCTCAGGTACTCATATCTCCTCCTATTTCATCATCCTCGCTTCCCTGTTCACGGTCATTTTTATTCTCCTGGGTTTGTACGTGATCAAAACCAAGTGTTATGCTAATCGGCGTGGCTGGAGACAAAATGGATCCCGATCAGAGGCCTCAGACCACGAGTTTCTTGATGAGAACCAAGTTGATCACCCTCTCTGGTTTATCACCACCGCTGGTCTACAGCAGTCGATTATAAATTCTATCACAGTTTGTAAGTACAAAAGGGGTGATGGGTTGATTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAATTTCGAGAAGATGAAACCTTGAGACTCTTGCCCAAGTGCAGCCATGCCTTTCACATACCCTGTATTGATACTTGGCTGCGTTCTCATACCAATTGTCCTCTCTGTCGTGCTGGGATTGTCTTGAGCAATGCCAGACCTGAGGCTTCCGTGTCAAATTTGGCTTCGAGGGACCTAAACTCGGACAATTCACGCAGGAACCAAGAGATTCAGCCTGAGAATCCGCTAAACGATGGTGAAGTAAACAACAATACGCAGGTAATTGCAAATGGGGCATCTGGAAACACAGCTGGAACAGTGGAAAGTCGAGAATTCAACGATAATTTGATCTCAAAGGAGTACGCGAATGTTGCACTCAATGGTCCAAAAGAGGATCATGAGGATCTAAATGAAGGGAAGCGAATCGAGATAAGGTCTATGTCTATGGATTCTAGACGGGCAAATTCTTCTGCTTCGGAACCCGAAGAAAGCCTTCCGGTGTTCAAAGAAATTAGGCGCTCCTCTGTTACTAAATGTCTACAGCTGAGCCCTGTTCCTATGAAGAGGTCGTTCTCTTGCAGTGGAAGGATTCTGTCTTCCAGAGATCACAGGAATCTGCATATAACTCTTCCATATTAG 1110 0.4604 MARIHRKLLPALSSTNETNVNETQDCPEFCDPACPYSCYSFPDYYFPPPPPPPPPFSATDHSSSGTHISSYFIILASLFTVIFILLGLYVIKTKCYANRRGWRQNGSRSEASDHEFLDENQVDHPLWFITTAGLQQSIINSITVCKYKRGDGLIEGTECSVCLNEFREDETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRAGIVLSNARPEASVSNLASRDLNSDNSRRNQEIQPENPLNDGEVNNNTQVIANGASGNTAGTVESREFNDNLISKEYANVALNGPKEDHEDLNEGKRIEIRSMSMDSRRANSSASEPEESLPVFKEIRRSSVTKCLQLSPVPMKRSFSCSGRILSSRDHRNLHITLPY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2885g00012 369 SUPERFAMILY RING/U-box 153 207 - -
Pral2885g00012 369 Pfam Ring finger domain 158 201 IPR001841 -
Pral2885g00012 369 FunFam RING-H2 finger protein ATL54 134 207 - -
Pral2885g00012 369 MobiDBLite consensus disorder prediction 215 264 - -
Pral2885g00012 369 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Pral2885g00012 369 MobiDBLite consensus disorder prediction 285 322 - -
Pral2885g00012 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 207 IPR013083 -
Pral2885g00012 369 MobiDBLite consensus disorder prediction 285 305 - -
Pral2885g00012 369 SMART ring_2 159 200 IPR001841 -
Pral2885g00012 369 CDD RING-H2_EL5-like 158 201 - -
Pral2885g00012 369 PANTHER RING-H2 FINGER PROTEIN ATL16 54 349 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2885g00012 Pral-Chr2885 20857 22395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2885g00012 1 206 C3H Transcription Factor Family AT1G72220 50.439 9.41e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2885g00012 - - aprc:113847030 350.903