Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2882g00005 ATGACTCGTATTCTCAAATCCACTGAGAACTCCACCTCCGTCGCCGCCGCTGCCACCATCACCGCAGCAGCGCCGCCTCCGGAGGCCGTCGCTTTGGAATCAGACTTCGTGGTCATCCTCGCGTCTCTGCTCTGCGCTCTCATATGCACCGTGGCCCTCATAGCTGTCTGCCGATGCACCTGGTTCCGTCGCGGTGGATCCGGAGCCGGCGGTGGAGCTCCGGGACAGTCTCTGGCCAACAAAGGTCTCAAGAAGAAGGTGCTCCAATCCATGCCGAAATTCACTTACATTGACAGCAATTCTGAGAAGTGGTTGGCCGCGTCGGAGTGCGCGATTTGCTTGGCCGAATTCGTCGGAGCTGACGAGATCCGAGTTCTTCCGCAGTGTGGCCACGGCTTCCACGCGGCGTGCATAGACACCTGGCTTGGGTCCCACTCTTCGTGCCCCTCGTGTCGGCAGATTCTTGTTCTGCCTCCGAGGTGCCGTAGGTGCGGCCTTTACCCGGCGGTTCGCGGCGGTGAAGCTACCGGAACTAGCGGTAGTGAACCAGAGCTCAAGTCCAGACATGATGATAATGCCACTACAGCTAATAATGATTATGCTAATAGCTCGACTAGCCACCACCAACGGCCCAGAGATAATGTTGGATTCCTTCCATAA 660 0.5758 MTRILKSTENSTSVAAAATITAAAPPPEAVALESDFVVILASLLCALICTVALIAVCRCTWFRRGGSGAGGGAPGQSLANKGLKKKVLQSMPKFTYIDSNSEKWLAASECAICLAEFVGADEIRVLPQCGHGFHAACIDTWLGSHSSCPSCRQILVLPPRCRRCGLYPAVRGGEATGTSGSEPELKSRHDDNATTANNDYANSSTSHHQRPRDNVGFLP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2882g00005 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 156 IPR013083 -
Pral2882g00005 219 SUPERFAMILY RING/U-box 88 163 - -
Pral2882g00005 219 Pfam Ring finger domain 109 152 IPR001841 -
Pral2882g00005 219 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Pral2882g00005 219 FunFam E3 ubiquitin-protein ligase ATL6 73 158 - -
Pral2882g00005 219 CDD RING-H2_EL5-like 109 152 - -
Pral2882g00005 219 MobiDBLite consensus disorder prediction 194 211 - -
Pral2882g00005 219 SMART FANCL_C_2 106 158 - -
Pral2882g00005 219 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 24 165 - -
Pral2882g00005 219 MobiDBLite consensus disorder prediction 173 219 - -
Pral2882g00005 219 SMART ring_2 110 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2882g00005 Pral-Chr2882 20707 21678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2882g00005 31 191 C3H Transcription Factor Family AT1G20823 57.310 4.23e-56 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2882g00005 - - gmx:100787383 261.922