Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2874g00011 ATGCTGCGTTGTCTGAACAGTTCGGAGAATCTCGCCGAGTCCTGCTCTGATATGACATTGACATTGTTAGAAACGCAAAGAGACAGGATGAAATGGCAGCAACCGCAGTTTCATCACCATCATCAGAACCAGAACTACTTTTCTGGGAATGGGTTTGACGCTGCGTTCTCGCCTCTGCAAGTTCCGAATTCTGGGGGATTGATGGTGATCAATGGCGGCGGTGGCGGTTCTGGGCTTGGTGAGGTGGCTGCTAATGCCAGCTCGGTGAAGCCAGCCCCGGGTTGGGAAAATGGGTGGTCCGAATTGGATAAGGCCGGCTTGCCTGGTACGGGATTTGTGTCTTCTGGATTTAACGTGAGCTCTGCAATTTCGAGGACTTCTAGCTGCCCGCCGTCTGTGGTGGCGTCGGCGGCTGCCACGCCAACGGAGAAGATGAGATCGACAAGTGGGAGAGAGAGCTTCAAGAAGAGGAAATCTGATAAAGCTCAGATCCCCAAGGCTGTTGCAGAAAATGAGAAGAGCAAGAAAAACAAAACGAGTGTTGAGAAAGGGGAACCCAAAGTCACAAGAGATAATAATGACAAGAACAGAGAAACATCTGCAGAATCTTCGAAAGAGAATTCAAAAGCGTCTGAGGTTCAAAATCAGAAGCCTGACTACATTCATGTCCGAGCACGTCGTGGACAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTATTTACAAGGTTTAGTGCCTGGTTGTAACAAAATCACAGGAAAAGCTGGAATGCTCGATGAAATCATCAATTATGTTCAATCTCTTCAACGACAAGTAGAGTTTTTGTCGATGAAACTAGCTGCTGTAAACCCAAGGATTGACTTCAACGTTGACGATCTGTTTACCAAAGAGGTTTTTCCTGCTTGTGCTTCTACGAGTTTTCCAGCCATAGATATGACACTTAACCCTGCCTATCTTCAGTTTAATCCAACACAACATGTTGCTTCATGTTCCGGATTAGATATGGGCATAAACCCTCCAGATTTGGGACTTCGAAGGACCATTAGTGCCCCTGTATCCTTGCCAAACGAAACGTTTCTTGAGCCACCATGTTTCAATAACCTGTACAATGTGGCTTTTGATCAAGCCAGATCAACAACGTCGTCCTTTCCTTCTCAGCCATTCACAGGACTAATTGAAGCTAGCAATCTAAAGATGGAGATGTGA 1239 0.4609 MLRCLNSSENLAESCSDMTLTLLETQRDRMKWQQPQFHHHHQNQNYFSGNGFDAAFSPLQVPNSGGLMVINGGGGGSGLGEVAANASSVKPAPGWENGWSELDKAGLPGTGFVSSGFNVSSAISRTSSCPPSVVASAAATPTEKMRSTSGRESFKKRKSDKAQIPKAVAENEKSKKNKTSVEKGEPKVTRDNNDKNRETSAESSKENSKASEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQGLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRIDFNVDDLFTKEVFPACASTSFPAIDMTLNPAYLQFNPTQHVASCSGLDMGINPPDLGLRRTISAPVSLPNETFLEPPCFNNLYNVAFDQARSTTSSFPSQPFTGLIEASNLKMEM 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2874g00011 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 279 IPR011598 GO:0046983
Pral2874g00011 412 SMART finulus 235 285 IPR011598 GO:0046983
Pral2874g00011 412 FunFam Basic helix-loop-helix transcription factor 226 298 - -
Pral2874g00011 412 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 142 328 IPR024097 GO:0006355
Pral2874g00011 412 MobiDBLite consensus disorder prediction 148 205 - -
Pral2874g00011 412 MobiDBLite consensus disorder prediction 123 147 - -
Pral2874g00011 412 MobiDBLite consensus disorder prediction 123 238 - -
Pral2874g00011 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 298 IPR036638 GO:0046983
Pral2874g00011 412 MobiDBLite consensus disorder prediction 219 238 - -
Pral2874g00011 412 Pfam Helix-loop-helix DNA-binding domain 233 280 IPR011598 GO:0046983
Pral2874g00011 412 CDD bHLH_AtBPE_like 219 304 - -
Pral2874g00011 412 Gene3D - 226 299 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2874g00011 Pral-Chr2874 79414 82339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2874g00011 147 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 50.870 8.15e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2874g00011 HLH 9.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2874g00011 - - pcin:129293639 620.542