Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2868g00008 ATGGCGAGACGACCGAGACAGAAGAACAGGAAGCTGATCGCCGACCCCAGAACCAAGCATACCACCTTCTCCAAGCGCCGGTGTTCCATCTTCCAGAAAGCCAGCGAGCTCTGTACTTTGTGCGCCGTCGAGATGGCTCTCGTCATCTTCTCTCCCGGGGGCAAACCCTACTCGTTCGGCCATCCTTCTACTGATGCAGTAATCGACAGACTCATCACCGGTTCTGCAGATCCCATTCTCCATAATTCTTCTGAAGAAGAAAAGGCCCAGCGAGAAGCGATCATGGCGGAGCTGGACAAGGAGTACAGCGATCTGAATGCGCAGTTGAAGGAAGAGAAGGAACGAGGCAAGGAGCTGAACCAGGAGATGAAGAATCTTCCAGATATCGAGAAGATGAGCAGAGATGAGCTGATGAAGTTGAAGGAATCACTTGAAGCTCTGAGAGTGAAAATACGCAGTCGTAAAGAGGAGCTTTTGGCTGGGAAGGGTACTGGGGATGATGATGATCTGAGATTAACGTTGGGTGGTGTATTTTCTGGAGGAGAAGCTTCTTCTTCAAGCTCTGCAAAAACTGATCATCATCATCAGGCCGGAGAAGAAGATTTTTCTGCAAATGCCGACGATGGAGATGATGGTGATCTTAGTCTGAATCTATCAGCTTTTGTTCCCGGTGATGCATAA 681 0.4934 MARRPRQKNRKLIADPRTKHTTFSKRRCSIFQKASELCTLCAVEMALVIFSPGGKPYSFGHPSTDAVIDRLITGSADPILHNSSEEEKAQREAIMAELDKEYSDLNAQLKEEKERGKELNQEMKNLPDIEKMSRDELMKLKESLEALRVKIRSRKEELLAGKGTGDDDDLRLTLGGVFSGGEASSSSSAKTDHHHQAGEEDFSANADDGDDGDLSLNLSAFVPGDA 226
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral2868g00008 226 ProSiteProfiles MADS-box domain profile. 11 63 IPR002100 GO:0003677|GO:0046983
Pral2868g00008 226 MobiDBLite consensus disorder prediction 188 202 - -
Pral2868g00008 226 Coils Coil 137 157 - -
Pral2868g00008 226 SUPERFAMILY SRF-like 10 85 IPR036879 GO:0003677|GO:0046983
Pral2868g00008 226 Coils Coil 88 126 - -
Pral2868g00008 226 FunFam Agamous-like MADS-box protein AGL62 15 79 - -
Pral2868g00008 226 SMART madsneu2 2 62 IPR002100 GO:0003677|GO:0046983
Pral2868g00008 226 Gene3D - 16 90 IPR036879 GO:0003677|GO:0046983
Pral2868g00008 226 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Pral2868g00008 226 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Pral2868g00008 226 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Pral2868g00008 226 PANTHER MADS BOX PROTEIN 6 151 - -
Pral2868g00008 226 MobiDBLite consensus disorder prediction 160 226 - -
Pral2868g00008 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral2868g00008 Pral-Chr2868 33860 34540 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2868g00008 21 148 Type I MADS-box Gene Family AT5G60440 40.146 6.37e-27 103
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral2868g00008 SRF-TF 2.9e-19 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2868g00008 - - pcin:129297271 256.914