Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2867g00003 ATGTCACAAGATTCTGTCGAGATAAAGACGATTGAGCAGTGGAGATGGTCGGAAATGCAAGGCCTTGAGCTCGTCTCTCCTGCTCCTATTTCTGACTCTCACACCGCACCAACACAAACAGAGGAAAACAGAGAGGCGAAGCCAATGGACGCTACTCAAGAGGGAGAGCGAAAGGAAGTTGGAAGTCTCGCTAATGGCAGTGCCAGCGGTGGAAGTGGTAGCAGTAGTGGGGAGAAGCCTGAGAATATTCCGGCTGTTGGATTTGGCGAGCTTTTCAGATTTGCCGATGGGTTGGATTACATTCTGATGGCTATAGGAACAATCGGAGCAATCGTGCACGGTTGTGCTCTGCCGTTATTTCTCCGGTTCTTCGCCGATCTCGTCAATTCTTTTGGGTCGAATGTCAATAATGTGGACAAGATGACCCAGGAAGTCGTCAAGTACGCATTTTACTTCCTGGTGGTGGGTGCTGCTATATGGGCATCATCTTGGGCAGAGATATCTTGCTGGATGTGGACTGGCGAGAGGCAATCAACGAAGCTGAGGATCAAATACCTTGAAGCTGCCTTGAACCAGGACATTCAATACTTTGATACCGAGGTTAGAACATCTGACGTCGTTTTTGCCATCAACACTGATGCGGTCATGGTCCAGGACGCCATTAGCGAGAAGCTGGGTAATTTCATTCACTACATGGCGACTTTTGTTTCTGGATTTGTGGTGGGTTTCACCGCGGTTTGGCAATTAGCTCTTGTTACTCTGGCCGTAGTCCCTATGATAGCTGTAATCGGAGGCATTCACACCACCACCTTGACCAAGCTCTCAGCCAGAGGCCAGGAAGCTCTCTCTAAAGCTGGAAACATCGTGGAACAGACAATCATGCAGATTCGAGTAGTACTGGCTTTCGTTGGCGAGAGTCGAGCATTACAGGATTACTCTTCGGCGTTGAAGGTAGCTCAAAAGACTGGCTACAAAAGTGGGTTCGCAAAGGGAATGGGATTAGGCGCGACATACTTTGTCGTTTTCTGCTGTTATGCGCTCCTGCTATGGTACGGCGGCTACCTCGTCAGGCACCACTACACCAATGGAGGACTCGCCATCTCCACCATGTTCGCTGTTATGATTGGCGGATTGGGTTTGGGGCAATCTGTGCCCAGCATCACTGCATTCACAAAGGCTAGAGTCGCTGCCGCAAAAATTTTCCGAATCATCGACCACAAACCGGGCGTAGACCGGAATACTGATTCGGGTTTGGAACTAGAGTCCGTGACTGGGTTAGTTGAGCTCAAAAATGTGGATTTCTCATACCCGTCAAGGCCAGATGTTCGGATCCTCGATGATTTCTCTTTGAATGTGCCGGCCGGCAAGACCATCGCTTTGGTCGGCAGCAGTGGCTCCGGCAAGAGCACCGTCGTCTCCCTCATCGAGAGATTCTATGACCCCACTTCAGGACAAGTTCTGCTAGACGGACATGACATTAAAACATTGAAACTGAGATGGTTGAGGCAGCAAATAGGACTTGTAAGCCAAGAGCCTGCTTTATTTGCAACAACTATCCGAGAAAATATATTGTTGGGTAGGCCTGATGCCGACCAGGTGGAGATTGAAGAAGCTGCAAGAGTAGCTAATGCTCATTCGTTTATCATCAAGCTCCCCGAAGGCTATGAGACCCAGGTAGGAGAGAGAGGATTGCAGCTTTCTGGAGGGCAAAAGCAGAGAATAGCAATAGCAAGGGCAATGCTGAAGAACCCAGCAATTCTTCTTCTGGATGAGGCAACAAGTGCATTAGACTCTGAATCTGAAAAGCTAGTGCAAGAAGCCCTTGACCGATTCATGATTGGTAGAACAACTCTTGTAATTGCCCATCGCCTTTCCACCATTCGCAAGGCTGACCTTGTTGCGGTGCTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAACTCTTCGCTAAGGGTGAAAATGGAGTTTACGCCAAGCTTATCCGGATGCAAGAAATGGCACATGAAACTGCCATGAATAATGCCAGAAAGAGCAGTGCAAGGCCGTCGAGTGCAAGAAATTCTGTAAGCTCCCCAATAATTGCTCGGAATTCCTCTTATGGCCGCTCACCATATTCACGCAGGCTATCTGACTTCTCTACTTCTGATTTTAGTCTATCCCTTGATGCTTCGCATCCAAACTATAGGCTTGAAAAGCTTGCCTTCAAAGAGCAAGCCAGTTCCTTTTGGCGCCTTGCGAAAATGAATTCTCCTGAATGGCTTTATGCTTTTGTCGGTTCTATAGGCTCCGTTGTTTGCGGATCTCTCAGTGCATTCTTTGCATATGTTCTCAGTGCTGTGCTTAGTGTCTATTACAATCCAAATCACAGATACATGATCCGAGAAATAGAAAAGTACTGTTACTTGTTGATCGGGCTTTCATCGGCTGCACTTCTCTTCAATACACTGCAACACTTCTTTTGGGATATTGTTGGTGAAAACCTTACTAAACGAGTGCGGGAGAAAATGCTTACAGCTGTGCTGAAAAATGAAATGGCTTGGTTCGAGCAGGAGGAAAATGAGAGTGCCCGTGTTGCAGCAAGGCTCGCTCTTGATGCCCAAAATGTTAGATCAGCCATTGGAGATCGGATTTCAGTAATAGTGCAGAATACTGCTCTTATGTTAGTTGCTTGTACTGCAGGGTTTGTATTGCAATGGCGCCTTGCACTTGTCCTCATAGCTGTCTTCCCCGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGAGACTTGGAAGCTGCACATGCCAAGGCCACACAACTTGCAGGGGAGGCTATAGCAAATGTAAGAACTGTTGCAGCCTTCAATTCGGAGACAAAAATTGTTGGTCTTTTCACTTCCAACCTTGAAACACCACTGCGACGTTGCTTTTGGAAGGGGCAAATTTCTGGAAGTGGATTTGGGATAGCTCAGTTTGCACTCTATGCTTCATATTCGCTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAACATGGAATCTCAGATTTCTCCAAAACAATCAGAGTCTTTATGGTCCTTATGGTCTCTGCCAATGGTGCTGCGGAAACTTTAACCCTAGCTCCTGACTTCATTAAGGGAGGTCGAGCCATGAGATCAGTGTTTGATCTTCTCGATCGCAGAACTGAAATTGAACCAGATGACCCAGATGCTATCCCCGTTCCTGATCGGCTTCGTGGAGAAATTGAACTCAAGCATGTAGACTTCTCTTACCCCAGTCGTCCAGATATGCCAGTTTTTCGTGATCTCAGTCTTCGTGCTAGGGCAGGTAAAACTCTGGCCCTCGTAGGACCAAGCGGCTGTGGTAAGAGCTCAGTGATTGCCCTCGTACAAAGATTCTATGATCCAACTTCTGGGCGGGTTATGATTGATGGAAAGGACATTCGAAAATACAATCTCAAGTCCCTCAGATGCCACATTGCCATTGTACCTCAAGAGCCTTGTTTGTTTGCTTCTTCTATATATGAAAACATAGCTTATGGGAATGAGTCAGCAACTGAAGCTGAGATAATTGAAGCAGCAACTCTTGCCAATGCTCACAAGTTCATATCTGGCTTGCCAGATGGATACAAAACCTTTGTTGGGGAAAGAGGAGTTCAGCTATCCGGAGGTCAAAAACAAAGAATAGCAATAGCCCGGGCTTTTGTCAGGAAGGCGGAGATTATGCTTCTTGATGAGGCAACAAGTGCGCTTGATGCTGAATCTGAGAGGTCTGTTCAAGAGGCTCTAGACCGTGCTTGCTCTGGAAAAACTACTATTATTGTTGCCCACAGGCTATCAACTATTAGAAATGCCAATGTGATTGCGGTGATTGATGATGGGAAAGTAGCAGAGCAAGGATCTCACTCGCAGTTGTTGAAAAATCACCCTGATGGGATATATGCACGCATGATTCAATTACAAAGGTTCACACACACCCAAGTTATTGGGATGGCCTCTGGTTCAAGTTCTGCAAGACCAAAAGATGATGATGAAAGAGAAGGTTAG 4047 0.4675 MSQDSVEIKTIEQWRWSEMQGLELVSPAPISDSHTAPTQTEENREAKPMDATQEGERKEVGSLANGSASGGSGSSSGEKPENIPAVGFGELFRFADGLDYILMAIGTIGAIVHGCALPLFLRFFADLVNSFGSNVNNVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKLRIKYLEAALNQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLTKLSARGQEALSKAGNIVEQTIMQIRVVLAFVGESRALQDYSSALKVAQKTGYKSGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAISTMFAVMIGGLGLGQSVPSITAFTKARVAAAKIFRIIDHKPGVDRNTDSGLELESVTGLVELKNVDFSYPSRPDVRILDDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLAFKEQASSFWRLAKMNSPEWLYAFVGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHRYMIREIEKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFEQEENESARVAARLALDAQNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFTSNLETPLRRCFWKGQISGSGFGIAQFALYASYSLGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDPDAIPVPDRLRGEIELKHVDFSYPSRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYDPTSGRVMIDGKDIRKYNLKSLRCHIAIVPQEPCLFASSIYENIAYGNESATEAEIIEAATLANAHKFISGLPDGYKTFVGERGVQLSGGQKQRIAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIIVAHRLSTIRNANVIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHTQVIGMASGSSSARPKDDDEREG 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2867g00003 1348 Pfam ABC transporter transmembrane region 103 376 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2867g00003 1348 Pfam ABC transporter transmembrane region 762 1029 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2867g00003 1348 SUPERFAMILY ABC transporter transmembrane region 91 411 IPR036640 GO:0005524|GO:0016020
Pral2867g00003 1348 CDD ABC_MTABC3_MDL1_MDL2 427 666 - -
Pral2867g00003 1348 ProSitePatterns ABC transporters family signature. 566 580 IPR017871 GO:0005524|GO:0016887
Pral2867g00003 1348 MobiDBLite consensus disorder prediction 65 79 - -
Pral2867g00003 1348 FunFam ABC transporter B family member 1 738 1047 - -
Pral2867g00003 1348 Gene3D ABC transporter type 1, transmembrane domain 90 679 IPR036640 GO:0005524|GO:0016020
Pral2867g00003 1348 Pfam ABC transporter 445 594 IPR003439 GO:0005524
Pral2867g00003 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1074 1321 IPR027417 -
Pral2867g00003 1348 ProSitePatterns ABC transporters family signature. 1221 1235 IPR017871 GO:0005524|GO:0016887
Pral2867g00003 1348 MobiDBLite consensus disorder prediction 38 57 - -
Pral2867g00003 1348 PANTHER ABC TRANSPORTER B FAMILY 71 771 IPR039421 -
Pral2867g00003 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 666 IPR027417 -
Pral2867g00003 1348 Pfam ABC transporter 1101 1249 IPR003439 GO:0005524
Pral2867g00003 1348 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 104 392 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2867g00003 1348 Gene3D ABC transporter type 1, transmembrane domain 1048 1324 IPR036640 GO:0005524|GO:0016020
Pral2867g00003 1348 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1082 1318 IPR003439 GO:0005524
Pral2867g00003 1348 FunFam ABC transporter B family member 19 1048 1070 - -
Pral2867g00003 1348 CDD ABC_MTABC3_MDL1_MDL2 1082 1321 - -
Pral2867g00003 1348 FunFam ABC transporter B family member 1 417 667 - -
Pral2867g00003 1348 CDD ABC_6TM_Pgp_ABCB1_D1_like 103 400 - -
Pral2867g00003 1348 SUPERFAMILY ABC transporter transmembrane region 746 1069 IPR036640 GO:0005524|GO:0016020
Pral2867g00003 1348 Gene3D - 417 667 IPR027417 -
Pral2867g00003 1348 Gene3D - 1071 1322 IPR027417 -
Pral2867g00003 1348 FunFam ABC transporter B family member 1 1073 1322 - -
Pral2867g00003 1348 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 759 1046 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2867g00003 1348 MobiDBLite consensus disorder prediction 25 80 - -
Pral2867g00003 1348 Gene3D ABC transporter type 1, transmembrane domain 738 1047 IPR036640 GO:0005524|GO:0016020
Pral2867g00003 1348 FunFam ABC transporter B family member 1 90 425 - -
Pral2867g00003 1348 SMART AAA_5 454 640 IPR003593 GO:0016887
Pral2867g00003 1348 SMART AAA_5 1109 1301 IPR003593 GO:0016887
Pral2867g00003 1348 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 427 663 IPR003439 GO:0005524
Pral2867g00003 1348 CDD ABC_6TM_Pgp_ABCB1_D2_like 748 1064 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2867g00003 Pral-Chr2867 18027 24519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2867g00003 79 1344 Calmodulin-binding Proteins AT2G36910 88.319 0.0 2300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2867g00003 K05658 - gmx:100814667 2332.75