Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2860g00009 ATGGCAATTCCGTTCTCATTTCTCCTCCTCCTCCTCCTCCTCGCTCCTTCCTTCATTTTCTGTTCCACGCTTCAAGATCCACACCTGGTAGTCGAACAAGTGCACAAGAGCATCAATGCGTCGAGAAGAAACCTGGGGTTTCTTTCTTGCGGAACCGGGAATCCCGTTGATGATTGTTGGAGGTGTGACCCCAACTGGGAGAAGAACAGAAAGCGTCTGGCAGATTGCGGCATTGGGTTCGGCCAGAACGCCATCGGAGGCAGAGACGGCAGATATTACGTCGTCACCGACCCCGGCGACCACCCCGTGAATCCCAAGCCAGGAACCCTCAGATACGGCGTCATACAGAAGGAGCCACTGTGGATCATCTTCAAGAAAGACATGGTCATCAAGCTCACAGAAGAACTGATCATGAACTCCTTCAAGACCATCGATGGCAGAGGAGCCAATGTTCACATCGCAGGTGGTCCTTGCATCACTATCCAGTACGTGACCAACGTCATTATCCACGGAATCAACATTCACGACTGTAAACGAGGAGGTAACGCCTACGTGCGAGATTCTCCGACACATTACGGGTGGAGAACGGTGTCGGACGGCGACGGAGTTTCCATTTTCGGAGGAAGCCACATCTGGGTGGACCACTGTTCTCTGTGGAATTGCGAAGATGGACTGATTGATGCGGTTCAAGGATCGACGGCAATCACAATCTCAAACAATTACATGACTCGCCACGACAAGGTGATGCTTCTGGGTCACAGTGACAGTTACACGCAGGACAAGAACATGCAGGTCACCATAGCCTTCAACCATTTCGGCAAAGGCTTGGTCCAGAGAATGCCAAGATGCAGGCATGGGTACTTCCATGTGGTGAACAATGACTACACTCAGTGGGGCATGTATGCCATAGGAGGGAGTGCGAATCCAACTATATACAGTCAAGGAAATAGATTTCTTGCTTCTAATGACGGAAACTTAAAAGAGGTGACGAAGAGGGAGAATTCGCCGGAGAGTGAATGGAAGAACTGGAACTGGAGGTCGTCGGGGGATCTGATGGTAAACGGTGCGTTTTTCACGCCGTCAGGGAAGGGAGCATCTTCAAGCTATGCTCGAGCTTCAAGTCTGTCTGCGAAATCGTCTTCTTTGGTTGGATCTATAACAGGCTCGGCTGGAGCACTTAAATGCACAAAGGGCTCTCGTTGCTGA 1206 0.5083 MAIPFSFLLLLLLLAPSFIFCSTLQDPHLVVEQVHKSINASRRNLGFLSCGTGNPVDDCWRCDPNWEKNRKRLADCGIGFGQNAIGGRDGRYYVVTDPGDHPVNPKPGTLRYGVIQKEPLWIIFKKDMVIKLTEELIMNSFKTIDGRGANVHIAGGPCITIQYVTNVIIHGINIHDCKRGGNAYVRDSPTHYGWRTVSDGDGVSIFGGSHIWVDHCSLWNCEDGLIDAVQGSTAITISNNYMTRHDKVMLLGHSDSYTQDKNMQVTIAFNHFGKGLVQRMPRCRHGYFHVVNNDYTQWGMYAIGGSANPTIYSQGNRFLASNDGNLKEVTKRENSPESEWKNWNWRSSGDLMVNGAFFTPSGKGASSSYARASSLSAKSSSLVGSITGSAGALKCTKGSRC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2860g00009 401 FunFam Pectate lyase 53 394 - -
Pral2860g00009 401 Gene3D - 53 394 IPR012334 -
Pral2860g00009 401 Pfam Pectate lyase 138 318 IPR002022 -
Pral2860g00009 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Pral2860g00009 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Pral2860g00009 401 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Pral2860g00009 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Pral2860g00009 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Pral2860g00009 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Pral2860g00009 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Pral2860g00009 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Pral2860g00009 401 SUPERFAMILY Pectin lyase-like 39 395 IPR011050 -
Pral2860g00009 401 PANTHER PECTATE LYASE 18-RELATED 25 399 IPR045032 GO:0030570
Pral2860g00009 401 SMART amb_all 127 324 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2860g00009 Pral-Chr2860 70364 71779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2860g00009 3 401 Polysaccharide Lyase AT5G63180 74.752 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2860g00009 K01728 - gmx:100782388 701.434