Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2860g00008 ATGGCAATTCCATTCTCCTTTACATTTCTCCTCCTACTTCTGGCTCCTTCCTTCATTTTCTCTTCCCCACTGCAAGATCCAGAAGTAGTAGTCGAACAAGTACACAAGAGCATCAATGTGTCGAGAAGAAACCTGGGGTTTCTTTCTTGCGGAACTGGGAATCCCGTTGATGATTGTTGGAGGTGTGACCCCAAATGGGAGAAGAACAGAAAGCGTCTGGCGGATTGCGGCATTGGGTTCGGCAAGAACGCCATCGGAGGCAGAGACGGCAGATACTACGTCGTCACCGACCCCGGCGACCACCCCGTGAGTCCCAAGCCAGGAACCCTCAGATACGGCGTTATACAGAAGGACCCACTGTGGATCATCTTCAAGAAAGACATGGTCATCAAGCTCGAAGAAGAACTGATCATGAACTCCTTCAAGACCATCGATGGCAGAGGAGCCGATGTTCACATCGCAGGGGGTCCTTGCATCACTATCCAGTTCGTTACCAACGTCATTATCCACGGAATCAACATTCACGACTGTAAACGAGGAGGTAAAGCGTACGCACGAGATTCTCCTACACATTACGGGTGGAGAACGGTGTCGGACGGCGACGGAGTCTCCATTTTCGGAGGAAGCCACATCTGGGTGGACCACTGTTCTCTGTGGAATTGCGAAGATGGACTGATTGATGCGGTTCAAGGACAAGTCCAAAAGAAATGGTATCGAATTGTTTTGTTTTTGACAGAAAAGTTGCCTACCCCCTCAAAAAATGTTGCAAATCAAGTAGCTGTACATTCTCTGAAAACAGTTGTGGAGATGACATCAATGTCAATGCTTCTTCACGCCTTGAATTGA 846 0.4858 MAIPFSFTFLLLLLAPSFIFSSPLQDPEVVVEQVHKSINVSRRNLGFLSCGTGNPVDDCWRCDPKWEKNRKRLADCGIGFGKNAIGGRDGRYYVVTDPGDHPVSPKPGTLRYGVIQKDPLWIIFKKDMVIKLEEELIMNSFKTIDGRGADVHIAGGPCITIQFVTNVIIHGINIHDCKRGGKAYARDSPTHYGWRTVSDGDGVSIFGGSHIWVDHCSLWNCEDGLIDAVQGQVQKKWYRIVLFLTEKLPTPSKNVANQVAVHSLKTVVEMTSMSMLLHALN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2860g00008 281 SMART amb_all 127 274 IPR002022 -
Pral2860g00008 281 Gene3D - 53 237 IPR012334 -
Pral2860g00008 281 PANTHER PECTATE LYASE 18-RELATED 24 231 IPR045032 GO:0030570
Pral2860g00008 281 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Pral2860g00008 281 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Pral2860g00008 281 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Pral2860g00008 281 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Pral2860g00008 281 SUPERFAMILY Pectin lyase-like 39 230 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2860g00008 Pral-Chr2860 49538 57129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2860g00008 3 233 Polysaccharide Lyase AT5G63180 72.650 1.93e-129 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2860g00008 K01728 - gmx:100816256 421.394