Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2860g00001 ATGGCAATTCCGTTCTCATTCACATTTCTCCTCCTCCTCGTCGTTGTTCCTTCCTTCATTTTCTCTTCCACGCTTCAAGATCCAAACTTGGTAGTCGAAGAAGTATACATGAGCATCAATGAGTCGAGAAGAAACCTGGGGTTTCTTTCTTGTGGGACAGGAAACCCCACTGACGATTGTTGGAGGTGTGATCCCAACTGGGAAAAGAACAGAAAGCGTCTCGCAGATTGCGGCATTGGGTTCGGCAAGAACGCCGTCGGAGGCAGAGACGGCAGATTCTACGTCGTCACCGACCCCAGCGACCACCCCGTGAATCCCAAGCCAGGAACACTCAGATACGGCGTCATACAGGAAGAGCCACTGTGGATCATCTTCAAGAAAGACATGGTCATCAAGCTCAAGCAAGAACTTATGATGAACTCCTTCAAGACCATCGATGGCAGAGGAGCCAATGTTCACATCGCAGGTGGCCCTTGCATCACAATGCAGTTCGTGACCAACATCATAATCCACGGAATCAACATTCACGACTGTAAACGAGGAGGCAACGCCTACGTGAGAGATTCTCCGACACATTACGGTTGGAGAACGGTGTCGGACGGCGACGGAGTTTCCATTTTCGGAGGAAGCCACATCTGGGTTGACCACTGTTCTCTCTGGAATTGCCAAGACGGACTGATCGATGCGATTCATGGATCCACAGCAATCACAGTCTCAAACAATTACATGACTCGCCATGACAAAGTGATGCTTCTGGGTCATAGTGACGGTTACAAGAAGGACAAGAACATGCAGGTCACCATAGCCTTCAACCATTTCGGTGAAGGGTTAGTCCAGAGAATGCCAAGATGCAGACATGGGTACTTCCATGTGGTGAATAATGACTATACCCATTGGAGGATGTATGCGATAGGAGGGAGTGCGGATCCAACTATAAACAGTCAAGGCAATAGATTTCTTGCTCCCAATGATGGTACCTTCAAAGAGGTGACCAAGAGGGAGGATTCACCTGAGAGCGTGTGGAAGAAGTGGAACTGGAGGTCATCAGGTGATCAGATGTTAAACGGTGCGTTTTTCACGCCGTCCGGTAAGGGATCATCTTCAAGCTATGCTCGAGCTTCAAGCTTGTCTGCAAAACCATCTTCACTGGTTAGTTCAATAACAGCAGCAGCTGGAGCACTTCAATGCAGAAAGGGGTCTCGTTGCTGA 1209 0.4897 MAIPFSFTFLLLLVVVPSFIFSSTLQDPNLVVEEVYMSINESRRNLGFLSCGTGNPTDDCWRCDPNWEKNRKRLADCGIGFGKNAVGGRDGRFYVVTDPSDHPVNPKPGTLRYGVIQEEPLWIIFKKDMVIKLKQELMMNSFKTIDGRGANVHIAGGPCITMQFVTNIIIHGINIHDCKRGGNAYVRDSPTHYGWRTVSDGDGVSIFGGSHIWVDHCSLWNCQDGLIDAIHGSTAITVSNNYMTRHDKVMLLGHSDGYKKDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSADPTINSQGNRFLAPNDGTFKEVTKREDSPESVWKKWNWRSSGDQMLNGAFFTPSGKGSSSSYARASSLSAKPSSLVSSITAAAGALQCRKGSRC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2860g00001 402 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Pral2860g00001 402 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Pral2860g00001 402 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Pral2860g00001 402 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Pral2860g00001 402 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Pral2860g00001 402 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Pral2860g00001 402 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Pral2860g00001 402 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Pral2860g00001 402 Pfam Pectate lyase 134 319 IPR002022 -
Pral2860g00001 402 PANTHER PECTATE LYASE 18-RELATED 32 400 IPR045032 GO:0030570
Pral2860g00001 402 SMART amb_all 128 325 IPR002022 -
Pral2860g00001 402 SUPERFAMILY Pectin lyase-like 55 393 IPR011050 -
Pral2860g00001 402 Gene3D - 54 395 IPR012334 -
Pral2860g00001 402 FunFam Pectate lyase 54 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2860g00001 Pral-Chr2860 14460 15956 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2860g00001 5 402 Polysaccharide Lyase AT5G63180 75.495 0.0 626