Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2854g00002 TCAACCCCGTCTGCTACTGGGAATGGATACGAGAACGGACTGGATAGCAGTCAGGGCGGTGCCGATAGCTGTAGCAATTCGAAGCCTGTGAGTGTGAAGCCGTTGATTTCTGAAAACGCGTGGACGAATAATACACAGAGTGGCACCGACAAGGATCACTCTGGTGGGGAAGAGGAAACTACAAGCAAACGTCGCCGCCGTAGTCGATGGGACCCGCAACCTGATTCCAATGATCAGAGTGGTGGTGAAGCCGGTGGCGGAACGAAGAAGAGGAAGTCACGATGGGCCGATGATGAGCCGAAGCCGGTGATTCAGCTTCCCGATTTCATGGGCGGTATTGAGTTTGATCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATCAGTCGAATGCTGCAATCAGGTTTGCCTTTAGATGATCGCCCTGAAGGTGCTAGATCTCCTTCACCTGAACCGATATATGATAACATGGGAATTAGAATTAACACTAGAGAATATCGTGCCCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATCATTTCTCAGATTATCAAGAAAAACCCCGCATTCAAGCCACCCGCCGATTATAGGCCACCGAAGCTTCAGAAGAAGCTGTACATACCAATGAAAGAATATCCTGGTTACAACTTTATAGGGCTTATTATTGGTCCTCGAGGCAACACACAGAAGCGCATGGAAAGAGAAACTGGTGCTAAAATTGTGATTCGAGGTAAAGGGTCAGTGAAAGAGGGTAGACTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTTCTTGTGGAGGCAGAAACACAAGAATCACTTGATGCTGCCGCAGGCATGGTGGAGAAACTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGAGAACTTGCGGCCTTGAATGGTACAATTAGGGATGAAGAATATTGCCGGCTGTGTGGTGAACCTGGCCATCGCCAATATGCATGCCCTACGCGCACTTCTACATTTAAGAGTGAAGTGGTCTGTAAGCATTGTGGGGATGGTGGTCACCCAAGCATAGACTGTCCAGTGAAGGGAGCCACAGGCAAGAAGATGGATGACGAATATCAGAACTTTTTGGCAGAGCTGGGAGGGACAGTTCCAGAATCATCTATAAAACAGACCAACACGTTGGCAATTGGTTCAGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGATCGACTGGCGGTACATCACAAGCTGGCTTAGGGGCTAATCCGGTTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATTTGCCGCCTACTCTTGATGATGATGGTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAGGTTATAAAAGATCGGATGACTGGTTTGAGTAAAGGATATGGGTTTGTCAAGTATGCTGATATCCAAATGGCAAATAATGCAATTATGGCCATGAATGGCTATCGCCTTGAGGGTAGAACCATTGCAGTGAGAGTTGCTGGTAAGCCGCCTCAGCCTACTGTTCCTCCTGGTCCGCCAGCATCAGCCATGCCCACATATCCTATTTCAAGCCAGCCAGTTGGTGCCTATCCATCCCAACAATATGCTGCTGGTGGTCCTTTAGGCGCTGCACCCCCTGGAAGTTATGCCAGTGCCCCAGTTCCATGGGGACCTCCTGTTCCTCCACCTTATGCTCCTTATGCTCCTCCCCCTCCTGGATCAACTATGTACCCTCCTATTCAAGGTCAATCTATACCTCCATACGGTATTCAGTATCCTCCAGTCCAGACAGCCCCTCCAGGTGCCCCATCCCAGCCTGCAGCTTCTAGTGAATCACAGCAGCAGAGTTTCCCTCCAGGAGTGCAGTCTGACAGCAGCACTTCTACTCAATCTACGTCGGCCAATATTTATGGGAGTTCAATACCTTCTATGCCACCAACTGCTCAACCTACATATGCTACATCTTATGGTTATCCGCCTTACTATGGTACAGTTCCCCCTCCACCCCCCCGCCTGCCCCTGCACCTATCCCGACTTCAGACCCACATGCCTTGGGCTACCAATCCTTCT 2115 0.4842 STPSATGNGYENGLDSSQGGADSCSNSKPVSVKPLISENAWTNNTQSGTDKDHSGGEEETTSKRRRRSRWDPQPDSNDQSGGEAGGGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESSIKQTNTLAIGSGNSGSNPPWANNSGSTGGTSQAGLGANPVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADIQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAMPTYPISSQPVGAYPSQQYAAGGPLGAAPPGSYASAPVPWGPPVPPPYAPYAPPPPGSTMYPPIQGQSIPPYGIQYPPVQTAPPGAPSQPAASSESQQQSFPPGVQSDSSTSTQSTSANIYGSSIPSMPPTAQPTYATSYGYPPYYGTVPPPPPRLPLHLSRLQTHMPWATNPS 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2854g00002 705 MobiDBLite consensus disorder prediction 85 101 - -
Pral2854g00002 705 MobiDBLite consensus disorder prediction 398 426 - -
Pral2854g00002 705 MobiDBLite consensus disorder prediction 398 430 - -
Pral2854g00002 705 FunFam splicing factor 1 322 375 - -
Pral2854g00002 705 MobiDBLite consensus disorder prediction 617 669 - -
Pral2854g00002 705 SMART rrm1_1 440 513 IPR000504 GO:0003723
Pral2854g00002 705 Pfam KH domain 217 265 IPR004088 GO:0003723
Pral2854g00002 705 Gene3D - 408 514 IPR012677 -
Pral2854g00002 705 ProSiteProfiles Zinc finger CCHC-type profile. 324 338 IPR001878 GO:0003676|GO:0008270
Pral2854g00002 705 SUPERFAMILY Retrovirus zinc finger-like domains 320 366 IPR036875 GO:0003676|GO:0008270
Pral2854g00002 705 SUPERFAMILY RNA-binding domain, RBD 435 529 IPR035979 GO:0003676
Pral2854g00002 705 CDD KH-I_BBP 201 294 - -
Pral2854g00002 705 MobiDBLite consensus disorder prediction 138 157 - -
Pral2854g00002 705 ProSiteProfiles Zinc finger CCHC-type profile. 350 364 IPR001878 GO:0003676|GO:0008270
Pral2854g00002 705 Gene3D - 116 194 IPR047086 -
Pral2854g00002 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 439 517 IPR000504 GO:0003723
Pral2854g00002 705 MobiDBLite consensus disorder prediction 590 689 - -
Pral2854g00002 705 Gene3D - 322 375 - -
Pral2854g00002 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 441 510 IPR000504 GO:0003723
Pral2854g00002 705 FunFam splicing factor-like protein 1 194 322 - -
Pral2854g00002 705 SMART c2hcfinal6 323 339 IPR001878 GO:0003676|GO:0008270
Pral2854g00002 705 SMART c2hcfinal6 349 365 IPR001878 GO:0003676|GO:0008270
Pral2854g00002 705 MobiDBLite consensus disorder prediction 1 105 - -
Pral2854g00002 705 MobiDBLite consensus disorder prediction 51 73 - -
Pral2854g00002 705 PANTHER RNA-BINDING PROTEIN RELATED 55 560 IPR045071 -
Pral2854g00002 705 MobiDBLite consensus disorder prediction 247 267 - -
Pral2854g00002 705 FunFam splicing factor-like protein 1 419 521 - -
Pral2854g00002 705 Pfam Splicing factor 1 helix-hairpin domain 91 198 IPR032570 -
Pral2854g00002 705 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 202 328 IPR036612 GO:0003723
Pral2854g00002 705 SMART kh_6 202 294 IPR004087 GO:0003676
Pral2854g00002 705 MobiDBLite consensus disorder prediction 1 50 - -
Pral2854g00002 705 ProSiteProfiles Type-1 KH domain profile. 217 289 - -
Pral2854g00002 705 Gene3D K Homology domain, type 1 199 321 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2854g00002 Pral-Chr2854 34562 36676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2854g00002 439 586 Eukaryotic Initiation Factors Gene Family AT3G16380 29.091 2.66e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2854g00002 K13095 - gmx:100800982 1039.25