Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2850g00007 ATGTCTAAACCATTAGAACATGATTACATAGGCTTAGCAGCATCAGAGAATCCGTCCATGGAGAAACACTCTGAGAAAATATCTTCTCCTTCTTCTGCTGCTTCGTCTACTCTTTCTTCTGAGAAGGAAAATAGCTCTTCTCTTAATTTCAAAGAGACAGAGCTCAGGCTTGGGCCTCCTGGTAGTGACTCTCCTCCTCCTCCTCTTGAGAGGAAATCAGGAACTGGGATTTCTCTTTTCGGGAAGGATTTGCAGAGTAATCATAATAATACTGATAGTAATGCTAACAATGCGTTCTGTTCTTCTTCCCCTTTGAAGAACAACGTGGCTGGAGCTAAGAGGGGTTTTTCTGACACCATTGATGGGATTGAGTCTTCTGGGAAATGGAGTTTTCCTGTAAGTGACAAAATTGGGTCTGAAGCTGATTTGGGAAAAGGAGCTTCTTTGTTCTCTCCCAGAGGAGGGAATGCTGTGAAGCCTCCTCCCGTTGCTGCAGAAGCTTCTGCAAATTCTGAACAAAAAAACATTAAAGATGGTGGAAAAGCTCAAGAGAAGAAGAAACCTCAGGTTACTGTTGCTGCTTCAAATGAACATGGAAGTGCTCCTCCTGCTGCTAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCTTTTCGAAAGAACAGCATGGCCTCTACTTCAACAAAGAACAATGATGAAGGTGAGGGTAAAGCAGGATATGGCTGTCTCTATGTGAAGGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTCAAAACCTTCAGCAACTATGTGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAGTGCAGCTCTGGAGGACTTGCTGTGAAAGAAGGCCTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGTTCTGAGTATGTTCTTACTTATGAAGATAAAGATGGAGATTGGATGCTTGTTGGTGATGTTCCCTGGGAGATGTTCACTGACTCGTGTAGGAGATTAAGGATCATGAAAGGTTCTGAGGCAACGGGGCTCGCTCCAAGGGTGGTGGAAAAATCCAGGGGCCAAAACTAG 1089 0.4463 MSKPLEHDYIGLAASENPSMEKHSEKISSPSSAASSTLSSEKENSSSLNFKETELRLGPPGSDSPPPPLERKSGTGISLFGKDLQSNHNNTDSNANNAFCSSSPLKNNVAGAKRGFSDTIDGIESSGKWSFPVSDKIGSEADLGKGASLFSPRGGNAVKPPPVAAEASANSEQKNIKDGGKAQEKKKPQVTVAASNEHGSAPPAAKAQVVGWPPIRSFRKNSMASTSTKNNDEGEGKAGYGCLYVKVSMDGAPYLRKVDLKTFSNYVELSSALEKMFSCFTIGQCSSGGLAVKEGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEATGLAPRVVEKSRGQN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2850g00007 362 Gene3D - 237 356 - -
Pral2850g00007 362 SUPERFAMILY CAD & PB1 domains 242 343 - -
Pral2850g00007 362 FunFam Auxin-responsive protein 237 354 - -
Pral2850g00007 362 MobiDBLite consensus disorder prediction 1 207 - -
Pral2850g00007 362 Pfam AUX/IAA family 52 353 IPR033389 -
Pral2850g00007 362 MobiDBLite consensus disorder prediction 24 52 - -
Pral2850g00007 362 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 47 348 IPR003311 GO:0005634|GO:0006355
Pral2850g00007 362 MobiDBLite consensus disorder prediction 79 108 - -
Pral2850g00007 362 ProSiteProfiles PB1 domain profile. 242 344 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2850g00007 Pral-Chr2850 28367 31278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2850g00007 244 351 B3 DNA Binding Superfamily AT1G19850 35.455 3.70e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral2850g00007 AUX_IAA 4.4e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2850g00007 K14484 - qsa:O6P43_018182 422.935