Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2842g00001 ATGTTAAATCGAAGTGGTGGAAGAGACCGGTTTAGAAGGGATTACCCTTCAAGATTTGAAGATAAAGGCAGCAGCGGGCGCAGCACCAGCAGCAACCCCCCTTCCAGGCACCTTTGGGTTGGGAATCTGTCGCACAGTATAACAGAGAATGACCTTGCTCGTCATTTTCTGCAGTTTGGACCACTTGAAAGCGTTGCATTCCAGCCTGGTCGTAGCTATGCTTTTATCAATTTCAGAAGGGATGAAGATGCTATTGATGCTTTGAATGAACTTCAAGGTTTTCCTGTTGCAGGCAACCCGCTTAGAGTCGAGTTTGCGAAGGCGGATAAGCCACCGTCACTAACACGTGATGATGATTACTCTTGGGATGAACGAAGCTCAGGGAGAAGAGGATCTCCTTTCTCTTCTAGAGAGTTTAGAGGACGCCGTGGTAGTCCTGAGCCTCCTTATCCTGACAAATCCAAGCTGACTGATAAAAACCCAGAACCCAGTGAGGTTTTGTGGATAGGGTTTCCATCTCAGTTAAATGTGGATGATTTAGCTTTGAGAAAGGCTTTTTCTCCATTTGGTGAGATCGAGAAGATAACAACATTTCCAGGTCGTAGTTATGCTTTTGTTCGTTTTAGGAGTGTAACTTCAGCACGCAGAGCAAGAGATACTCTGCAGGGAAAGTTATTTGGAAATCCACGTGTACATATTTGTTTTGCTAAGAGTGAAGCTGGTTCATCAAGCAGTGGGAGGTTTTCAATGAACACCCCTTCATCCCCATTTTACACATCAAGTGGCCGTCATGGATCGACTGAGAACTTGAGACAAGATAGGAGTGTTGCAGGCTTCAGTGGAGACCGTGGTGCTAGTTCCCCTATTATATTCCCAAAATGGGACTTGGCAGATCCTGATACTTATGATTCAGATAGAAGGGGTTCTTCACGGGCTAGTGGATTCAGTTCATATGAACAAAGGAGAGTTGGTGAAAAGGTGCCACCACTTGGAATACTACAGGACAGTCTTGAGCACTCAGTAAGTCCTTCTAGAGATAGGCAAGCTCATCTAGGTGCTTTTCCTCAGAGATATCCTCAAAAGCATGCATTGTTTGAAGATCCACGGGACTATCCAGATGATATGTATTATCAACATGACACCAAAAAACTGAAGACTGGATCTCTTCCTCCTGAAAAGGAGCTTCCAGAATATCCTCTTTCTGATTTAGAAAGGCAGAGACACACTTTCCTAAGGTTAATAACTGATTTGCCCCAACATGAGATCCTCGATAAAAGAATTGACGCTGGACCTGTTGTGCATAGACAAACTTTTGATCCCAGACCAAATTCCCCTTTTGCTCAGTCAGACAGGGATGAGCATTGGAAGCCTAGTGATAGTTTCCACGTGGGTCCCAGTGCTCTGCAATCATATTCTACTGAGAAGAGAAGACTCACACCTGAACCTGGTAACTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATTGCCAAAGGCGGAACACATGTTTGTCGTGCTCGCTGCTTCCCTGTGGGGAAAGTCCTGGATATCATGTTGTAA 1560 0.4494 MLNRSGGRDRFRRDYPSRFEDKGSSGRSTSSNPPSRHLWVGNLSHSITENDLARHFLQFGPLESVAFQPGRSYAFINFRRDEDAIDALNELQGFPVAGNPLRVEFAKADKPPSLTRDDDYSWDERSSGRRGSPFSSREFRGRRGSPEPPYPDKSKLTDKNPEPSEVLWIGFPSQLNVDDLALRKAFSPFGEIEKITTFPGRSYAFVRFRSVTSARRARDTLQGKLFGNPRVHICFAKSEAGSSSSGRFSMNTPSSPFYTSSGRHGSTENLRQDRSVAGFSGDRGASSPIIFPKWDLADPDTYDSDRRGSSRASGFSSYEQRRVGEKVPPLGILQDSLEHSVSPSRDRQAHLGAFPQRYPQKHALFEDPRDYPDDMYYQHDTKKLKTGSLPPEKELPEYPLSDLERQRHTFLRLITDLPQHEILDKRIDAGPVVHRQTFDPRPNSPFAQSDRDEHWKPSDSFHVGPSALQSYSTEKRRLTPEPGNSSLTEWKWEGTIAKGGTHVCRARCFPVGKVLDIML 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2842g00001 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 230 IPR000504 GO:0003723
Pral2842g00001 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 101 IPR000504 GO:0003723
Pral2842g00001 519 MobiDBLite consensus disorder prediction 301 323 - -
Pral2842g00001 519 MobiDBLite consensus disorder prediction 135 160 - -
Pral2842g00001 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 108 IPR000504 GO:0003723
Pral2842g00001 519 PANTHER RNA RECOGNITION MOTIF-CONTAINING 27 515 - -
Pral2842g00001 519 MobiDBLite consensus disorder prediction 435 485 - -
Pral2842g00001 519 SUPERFAMILY RNA-binding domain, RBD 23 115 IPR035979 GO:0003676
Pral2842g00001 519 CDD RRM_SF 167 233 - -
Pral2842g00001 519 Gene3D - 7 147 IPR012677 -
Pral2842g00001 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 238 IPR000504 GO:0003723
Pral2842g00001 519 MobiDBLite consensus disorder prediction 22 36 - -
Pral2842g00001 519 MobiDBLite consensus disorder prediction 107 161 - -
Pral2842g00001 519 MobiDBLite consensus disorder prediction 1 21 - -
Pral2842g00001 519 FunFam RNA recognition motif (RRM)-containing protein 151 244 - -
Pral2842g00001 519 SMART rrm1_1 37 104 IPR000504 GO:0003723
Pral2842g00001 519 SMART rrm1_1 166 234 IPR000504 GO:0003723
Pral2842g00001 519 MobiDBLite consensus disorder prediction 241 270 - -
Pral2842g00001 519 MobiDBLite consensus disorder prediction 1 36 - -
Pral2842g00001 519 CDD RRM_SF 38 104 - -
Pral2842g00001 519 Gene3D - 152 245 IPR012677 -
Pral2842g00001 519 MobiDBLite consensus disorder prediction 109 126 - -
Pral2842g00001 519 SUPERFAMILY RNA-binding domain, RBD 120 236 IPR035979 GO:0003676
Pral2842g00001 519 MobiDBLite consensus disorder prediction 463 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2842g00001 Pral-Chr2842 32508 39782 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2842g00001 28 237 Eukaryotic Initiation Factors Gene Family AT4G34110 24.215 1.20e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2842g00001 - - gmx:100811668 644.425