Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2836g00001 ATGGCTAATAACATTCAACTTCCGCCCCTCTTTTCCCTCGAAGATGAATTTGAAGAATCTGGCCCCGATGAACAGGCATCTGATCTCCCATCATCGGCTGCCCGCGATCATTGGTGCACCGACTCCTCCAACCCCTTTGCAACCGTGTCCTTCGACCATTTGAGCAACCATTCGAACTGGTACTCCGATTCGGACTCCGATTCGGTGAGTTGCTTTGTTACAGATCTTTTTGAAAATCGCTCGTCGGAGAACTTTTACCGTCGCTGTAACGATAATTCTGATATTAATCCGTTTTCGGCCGTTCCTTGCGATAGTCACGGTGGAGAAGGGTCAAGTTATGCGGAGAAGGAACTAGGGTCTGGATCTGGAACGGAAAAAAATGATGGGATTTCTGCAGTAGGCGAGACATCGGGCTCTGAAAGGGTTCGTTCGCACGCGGATGGCCTTCGAATTGTCGGGTTTAGTTCTGAGTCGGATTCTAATACCGATGAAGAGCTTGACAGGGCTATAGAATTCAGTTCTGGTGAAAATGATGGCAATAGAATCAATGGCTTTGACGATTTTGATGTTCATTTTTATTGGGACAGCCTTTGCTTGGAGGACCAGAGGACCCTCAATGAACATTTTGAGTGGGAGGATTTAGAGGAAAGAGTCAATGATGGAGAAGACTTGAGTGTGGTGATTGGTGAGGTTGATGATCAATCAGTAGCATCTGGATTTTCCTATGGAGAGGAGTCGGGTGAAGAGGCATTGAGATACCTTGAATGGGAAATTCTGTTAGCGGTCAACAACTTAGAGAGGAATTCAAGCGTTGAAAATGGCGCTACTGCAGGTTCCTTCTTAACGGTTCAGGATGATGGTTATATGAATACAACTGAGTATGATATGTTTTTTGGGCAATTCCTGGAAAATGAGAGTTCCTTAAAGGGAAGTCCTCCTGCCGCAAAAAGTGTCGTGGAGAATCTTCCTCTAGTAGAATTAACAGAGGAGGACTTGGTGGGGGAGAATGTGGCGTGTGCTGTTTGCAAAGATGAAATCATATGGAAGGAAAAAGTGAGAAGGCTTCCCTGCTCACACTTTTACCATGGGGAGTGCATTATGCCATGGCTGAGCATTCGTAATACATGCCCTGTTTGTCGGTATGAACTACCCACTGATGATCCCGATTATGAGCAGAGGAAGAGTCAGAGATCTGCTCATGATCTGTTGGAGTTTGCACTTTAG 1224 0.4583 MANNIQLPPLFSLEDEFEESGPDEQASDLPSSAARDHWCTDSSNPFATVSFDHLSNHSNWYSDSDSDSVSCFVTDLFENRSSENFYRRCNDNSDINPFSAVPCDSHGGEGSSYAEKELGSGSGTEKNDGISAVGETSGSERVRSHADGLRIVGFSSESDSNTDEELDRAIEFSSGENDGNRINGFDDFDVHFYWDSLCLEDQRTLNEHFEWEDLEERVNDGEDLSVVIGEVDDQSVASGFSYGEESGEEALRYLEWEILLAVNNLERNSSVENGATAGSFLTVQDDGYMNTTEYDMFFGQFLENESSLKGSPPAAKSVVENLPLVELTEEDLVGENVACAVCKDEIIWKEKVRRLPCSHFYHGECIMPWLSIRNTCPVCRYELPTDDPDYEQRKSQRSAHDLLEFAL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2836g00001 407 SUPERFAMILY RING/U-box 322 387 - -
Pral2836g00001 407 ProSiteProfiles Zinc finger RING-type profile. 339 380 IPR001841 -
Pral2836g00001 407 MobiDBLite consensus disorder prediction 124 138 - -
Pral2836g00001 407 FunFam E3 ubiquitin-protein ligase RING1-like 300 386 - -
Pral2836g00001 407 MobiDBLite consensus disorder prediction 1 36 - -
Pral2836g00001 407 Pfam Ring finger domain 339 380 IPR001841 -
Pral2836g00001 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 386 IPR013083 -
Pral2836g00001 407 MobiDBLite consensus disorder prediction 100 142 - -
Pral2836g00001 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 208 384 - -
Pral2836g00001 407 SMART ring_2 339 379 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2836g00001 Pral-Chr2836 12125 13533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2836g00001 136 395 C3H Transcription Factor Family AT3G02340 39.928 5.02e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2836g00001 - - pcin:129304768 698.738