Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2831g00002 ATGCAGATCTCTGTTTCTCTCCAATTCTTGGCCCTCACCTCTCTGCTCATGCCCTTGCTTTTACCCGCCGCCATCGCCTTCCCTGTGAAAAGGTTCAATGACTCTTCGAATGAGCATGCAGTAAAAAATCCGGAGGAGATAGCCACTATGGTCGATATGAGCATACGCAATCATACGGAAAGAAGGAACTTGGGTTTCTTCTCTTGTGGGACGGGGAATCCTATCGACGACTGCTGGCGGTGTGACCGGAACTGGCAACGCCACCGGAAACAGCTGGCCAACTGCGGCATTGGGTTCGGACGCAATGCCGTCGGAGGGCGAGACGGAAAGTACTACGTTGTGAGCGACCCGAGCGACGACGACCCCGTCAACCCAAAACCAGGCACCCTCCGCCACGCCGTCATCCAAGACGCTCCCTTATGGATTGTGTTCAAAAGGGACATGGTCATCACTCTAAAGCAAGAGCTCATCATGAACAGCTTTAAGACCATCGATGGCCGCGGTGTCAACGTCCACATCGCTTATGGGGGATGCATCACTATCCAATACGTCACCAACGTCATCATCCACGGCCTGAACATCCATGACTGCAAACCAACTGGCAACGCCTTGGTTCGTAGCTCGCCTTCGCATTACGGATGGAGGACCATGGCTGATGGAGATGGAATTTCCATCTTTGGTGCGAGCCACATCTGGATTGATCACAACTCACTCTCTAAATGTGCAGATGGTCTTGTTGATGCTGTCATGGGTTCGACTGCCATCACCATTTCCAACAATTTCTTTACTCACCACGATGAGGTGATGCTTTTGGGTCACAGTGACTCTTATGTGAGAGATAAGCATATGCAAGTGACCATTGCCTACAACCATTTTGGGGAGGGCCTTATTCAGAGAATGCCAAGATGCAGACACGGGTATTTCCACGTGGTCAACAATGACTACACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCAGATCCCACCATTAATAGCCAGGGGAACCGATACCTTGCCCCTCAGAACGCTTTTGCTAAGGAGGTGACGAAGAGAGTTGACACGGATCAAGGAGTATGGAAAAGTTGGAATTGGAGGTCAGAGGGAGACCTTTTGCTGAATGGTGCCTTCTTCACTTCGTCAGGTGCTGGGTCTGGAGCCAGCTATGCCAGAGCTTCAAGTTTATCAGCCAAATCATCTTCTTTGGTTGGTACCATCACCTCTGGTGCCGGTGTTCTTAGCTGCCGGAGGGGTTCTGCGTGTTAA 1266 0.5111 MQISVSLQFLALTSLLMPLLLPAAIAFPVKRFNDSSNEHAVKNPEEIATMVDMSIRNHTERRNLGFFSCGTGNPIDDCWRCDRNWQRHRKQLANCGIGFGRNAVGGRDGKYYVVSDPSDDDPVNPKPGTLRHAVIQDAPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGGCITIQYVTNVIIHGLNIHDCKPTGNALVRSSPSHYGWRTMADGDGISIFGASHIWIDHNSLSKCADGLVDAVMGSTAITISNNFFTHHDEVMLLGHSDSYVRDKHMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPQNAFAKEVTKRVDTDQGVWKSWNWRSEGDLLLNGAFFTSSGAGSGASYARASSLSAKSSSLVGTITSGAGVLSCRRGSAC 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2831g00002 421 PANTHER PECTATE LYASE 18-RELATED 41 419 IPR045032 GO:0030570
Pral2831g00002 421 Gene3D - 72 414 IPR012334 -
Pral2831g00002 421 SUPERFAMILY Pectin lyase-like 50 415 IPR011050 -
Pral2831g00002 421 SMART amb_all 147 344 IPR002022 -
Pral2831g00002 421 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Pral2831g00002 421 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Pral2831g00002 421 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Pral2831g00002 421 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Pral2831g00002 421 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Pral2831g00002 421 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Pral2831g00002 421 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Pral2831g00002 421 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Pral2831g00002 421 FunFam Pectate lyase 72 414 - -
Pral2831g00002 421 Pfam Pectate lyase 155 336 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2831g00002 Pral-Chr2831 5470 8963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2831g00002 37 421 Polysaccharide Lyase AT4G13710 79.231 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2831g00002 K01728 - gmx:100790659 697.967