Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2830g00003 ATGGCTTCTTCGTCTTCGCCTTCTTCTTCCATGTCGCGCGAGGGTCACTACAGAGGGGTCAGAAAGCGACCTTGGGGTCGATACGCCGCCGAGATTCGCGACCCGTGGAAGAAAACGCGCGTTTGGCTTGGCACGTTTGACACTCCGGAAGAAGCGGCGCTGGCCTACGACGGTGCTGCCCGTTCCCTCCGTGGTCCTAAGGCAAAAACCAACTTCCCTGCGGCTCCGGTGGCCACCGGAGGTCTGTCCCTCGACCTCAACGCCCCAACCTCTGATCATCGCTGGCCTCCCATCCCCTCCGGTCGCCTCGTGCTGAACGAGCTCCTCCACGTGGGTGTTCTCAAGGACATGTCTTTTGATCATCCTCCGCCTTCTTCCCCTGCAGCTCCCATTGCAATGGTTCACAACCGGCGTGATGGTTCTGTACCCGTGGACGGAGGTCATCGTCAGGTGACGGAGAACTCTCCCACGGCTTCATTTCTCGGCCTCGTTCGGCGAGGCCTGCCGATCGACTTGAACGAACCTCCTCCCGTCTGGCCTTGA 543 0.6059 MASSSSPSSSMSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGPKAKTNFPAAPVATGGLSLDLNAPTSDHRWPPIPSGRLVLNELLHVGVLKDMSFDHPPPSSPAAPIAMVHNRRDGSVPVDGGHRQVTENSPTASFLGLVRRGLPIDLNEPPPVWP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2830g00003 180 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 114 - -
Pral2830g00003 180 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Pral2830g00003 180 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Pral2830g00003 180 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Pral2830g00003 180 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Pral2830g00003 180 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Pral2830g00003 180 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Pral2830g00003 180 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Pral2830g00003 180 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Pral2830g00003 180 FunFam Ethylene-responsive transcription factor 2 16 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2830g00003 Pral-Chr2830 16075 16952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2830g00003 8 179 AP2-EREBP Transcription Factor Family AT1G28360 47.343 2.27e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral2830g00003 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2830g00003 - - cam:101504196 246.899