Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2827g00002 ATGAAGAGGTCCAGAGATGATGGTTATATGAGCTCTCAACTTAAACGGCCCATGATGTCTTCCCGGGGAGAAACATCGGGGCAGCCCCAGATGATGGATGGAGGTGCTCAAAAACTCACAACAAATGACGCCTTAGCATATCTCAAGGCAGTAAAGGAAATTTTTCAAGATAAAAGGGAAAAATATGATGATTTTTTAGAAGTCATGAAGGATTTCAAGGCTCAAAGGGTTGATACTGTGGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAGAGATCTAATTTTGGGATTTAACACCTTCTTGCCGAAGGGGTATGAAATCACACTTCCTTTGGAGGATGAACAACCTGTACAAAAGAAGCCTGTTGAATTTGAAGAGGCTATAAATTTTGTCAACAAAATTAAGTCTCGCTTTCAAGGTGATGATCATGTCTACAAGTCGTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCTCTGAGGTCTACCAGGAGGTTGCTTCACTTTTCCATGACCACCCAGATCTTCTTGATGAGTTTACTCACTTCCTTCCTGATACTTCAGGAACGGCATCTACACATTATGCTCCTTCCCGGAGCTCTATGCTTCGGGATCGGGGCTCTGCAGTGCCAAGGCAAATGAGTGTTGAAAAGAGAGAAAGGACTGTGGATTCTCATGGTGATCATGACCTTAGTGTTGATCGTTCTGACCCAGATCATGACAGAGTTGTGATTAAGGCAGAAAAGGAGCAGAGGAGGCGTGCTGAGAAGGAAAAGGACCTCAGAGAAGAGAGGGATAGGAGAGATGGGGAACGGGATGATAGAAATTATGGGCCTGATAGTAGCCGAGATTTTAACATGCCGCGCTTCCCCCCCAAACGGAAATCTGGTCGTAGGATTGATGACACTGGTGCTGAACCATTGCATCAAGGTGGTGACTCTGATGAAAATTTGAGCATGCGCCCGATGTCATCCGCCTGTGATGACAAAAGTTCTGTGAAGAGTATGTATAGTCAAGAGTTTGCTTTCTGTGAAAAAGTCAAGGAGAAATTGCGAAATCACGATGTTTATCAGGAATTTTTGAAGTGTCTACATATCTATAGCAGGGAAATAATTACCCGGCAAGAATTGGAATCCTTGGTGGGTGATTTACTGGGAAAATATCCAGACCTTATGGAGGGGTTTAATGAATTTTTGTCCAGATGTGAGAAGAATGATGGATTCCTTGCCGGTGTAATGAATAAAAAGTCCTTTTGGACTGAAGAGATTGCATCTAAGCCAGCAAAGGCAGAGGACAAGGATAGAGATAGAGCTCGAGATCATGATAGGGATGATCGGGTTAAAGAAAGAGATCGCGAACTGCGAGAAAGGGACAAATCTTCTCCTTTTATTAGCAAGGATGTATCAGGTCCTAAGATGTATCCATTTTCCAGCAAGGATAAATATTATGCAAAGCCTATAAACGAGCTAGACCTTTCTAACTGTGAGCAATGCACTCCCAGCTACCGTCTCCTACCAAAAAATTATCCAACACCCACGGCCAGCCAGAGAACTGAGCTTGGTGCTGAATTATTGAATGATCATTGGGTTTCTGTTACTTCAGGAAGCGAAGATTATTCTTTTAAGCACATGCGCAAAAATCAGTATGAAGAGAGCCTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTGACGACAAAGAGAGTGGAAGAGCTCTTAGAAAAGATCAATAATAATATTATTAAAGCAGACAGCCCTATTCGTATTGAGGAGCACTTGACAGCTCTAAATCGAAGGTGCGTTGAACGATTATATGGTGATCATGCACTTGATGTGATGGAGGTGTTGAGAAAGAATGCACCTCTAGCTTTACCTGTCATATTAAGCCGTTTGAAGCAGAAACAAGAAGAGTGGGCTAGGTGTCGTGCAGATTTTAATAAAGTTTGGGCTGAAATATATGCTAAGAATTATCATAAATCTCTTGATCATCGCAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACAAAAGCCTTACTGGCTGAAATAAAAGAAATTAGTGAGAAGAAGCACAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGACCTATTATTCCAAATTTGGAATTTGAGTATCCAGACCCAGATATTCATGAAGATCTGTATCAACTCATAAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTCATGAAGATTTGGACAACGTTTTTAGAACCAATGCTTGGCGTTCCTTCTCGACCCCAGGGTGCTGAGGATACAGAAGATGTTGTCAAGGCTAAGCATAATTCTGTGAAAGGTGGCACTGGCAATGCAAGTTTTGGTGGCAGTGATAGTAGTCCTGTTGTAGTTGCAAATGTAATGAACTCAAGACAATTAAATACATCTGGAAATGGGGATGAAAGTATTTCATTAGAAAAGTCGAATTCCAAGACTGAAACTTTGGATTACAGTAAACGTCATGAGGCAACGCATGTAAATTCATCCATGCATGATGAGGTATCAGTCGCCAACAAACAAGGTCATTCCAACGAGCGGTTAGCAAATGTGAATGCCTCGATGGCTTCTGGAATGGAGCAAAGTAATGGGAGAACAAATATAGATAATGCATCAGGGCTTACTGCTACTCCATCGAGACCTGGTAATGTTGCAGCTGAGGGAGGACATTTTCCTTCAACAGAGGTATGGCTTAACTCTTTGAAAAAATCCT 2803 0.4142 MKRSRDDGYMSSQLKRPMMSSRGETSGQPQMMDGGAQKLTTNDALAYLKAVKEIFQDKREKYDDFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPVQKKPVEFEEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVASLFHDHPDLLDEFTHFLPDTSGTASTHYAPSRSSMLRDRGSAVPRQMSVEKRERTVDSHGDHDLSVDRSDPDHDRVVIKAEKEQRRRAEKEKDLREERDRRDGERDDRNYGPDSSRDFNMPRFPPKRKSGRRIDDTGAEPLHQGGDSDENLSMRPMSSACDDKSSVKSMYSQEFAFCEKVKEKLRNHDVYQEFLKCLHIYSREIITRQELESLVGDLLGKYPDLMEGFNEFLSRCEKNDGFLAGVMNKKSFWTEEIASKPAKAEDKDRDRARDHDRDDRVKERDRELRERDKSSPFISKDVSGPKMYPFSSKDKYYAKPINELDLSNCEQCTPSYRLLPKNYPTPTASQRTELGAELLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIIKADSPIRIEEHLTALNRRCVERLYGDHALDVMEVLRKNAPLALPVILSRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKHKEDDVLLAIAAGNRRPIIPNLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAKHNSVKGGTGNASFGGSDSSPVVVANVMNSRQLNTSGNGDESISLEKSNSKTETLDYSKRHEATHVNSSMHDEVSVANKQGHSNERLANVNASMASGMEQSNGRTNIDNASGLTATPSRPGNVAAEGGHFPSTEVWLNSLKKS 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2827g00002 934 MobiDBLite consensus disorder prediction 323 337 - -
Pral2827g00002 934 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Pral2827g00002 934 Pfam Paired amphipathic helix repeat 361 405 IPR003822 GO:0006355
Pral2827g00002 934 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Pral2827g00002 934 MobiDBLite consensus disorder prediction 889 934 - -
Pral2827g00002 934 FunFam Paired amphipathic helix protein SIN3 337 410 - -
Pral2827g00002 934 MobiDBLite consensus disorder prediction 1 34 - -
Pral2827g00002 934 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Pral2827g00002 934 Gene3D Paired amphipathic helix 337 410 IPR036600 GO:0006355
Pral2827g00002 934 MobiDBLite consensus disorder prediction 435 478 - -
Pral2827g00002 934 SMART hdac_interact2seq4b 500 600 IPR013194 -
Pral2827g00002 934 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Pral2827g00002 934 Coils Coil 251 280 - -
Pral2827g00002 934 MobiDBLite consensus disorder prediction 823 842 - -
Pral2827g00002 934 SUPERFAMILY PAH2 domain 121 192 IPR036600 GO:0006355
Pral2827g00002 934 MobiDBLite consensus disorder prediction 195 337 - -
Pral2827g00002 934 MobiDBLite consensus disorder prediction 889 909 - -
Pral2827g00002 934 MobiDBLite consensus disorder prediction 823 846 - -
Pral2827g00002 934 MobiDBLite consensus disorder prediction 435 469 - -
Pral2827g00002 934 SUPERFAMILY PAH2 domain 339 406 IPR036600 GO:0006355
Pral2827g00002 934 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Pral2827g00002 934 Pfam Sin3 family co-repressor 502 593 IPR013194 -
Pral2827g00002 934 PANTHER SIN3B-RELATED 37 788 IPR039774 GO:0003714
Pral2827g00002 934 Coils Coil 573 593 - -
Pral2827g00002 934 ProSiteProfiles PAH domain profile. 339 408 IPR003822 GO:0006355
Pral2827g00002 934 MobiDBLite consensus disorder prediction 293 315 - -
Pral2827g00002 934 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Pral2827g00002 934 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Pral2827g00002 934 MobiDBLite consensus disorder prediction 14 34 - -
Pral2827g00002 934 MobiDBLite consensus disorder prediction 217 286 - -
Pral2827g00002 934 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Pral2827g00002 934 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2827g00002 Pral-Chr2827 16146 23377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2827g00002 19 120 WRKY Transcription Factor Family AT4G12020 55.769 3.58e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral2827g00002 Sin3_corepress 4.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2827g00002 K11644 - mnt:21394293 1343.56