Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2826g00002 ATGTTGAACGGGAAAGAACTGTTGAGACGTTCTCTCAGGCTTGATCTAGCTCATGAAAGGGGTGTATATTCCCACAGTAGCAAGAATGAATCATCCCAGGAGGATAAATCGTTAGGAGGGAATGAGGCTAAAATGCCAGCTGCTCCAAAAGAACAAAATGCCACATCAAAGACAGTATTTGTTGGAAACCTGTCGTATAGCGTGGAAAGGGCTGATTTGGAAAATTTGTTTAAAGATTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTCGGACATATTGAGTTTGCCACTTATGAAGCGGCACAAACTGCCCTTAAGTTGAATGGAAGCGAACTGTTGAGACAATATATAAGGCTTGATTTGGCTCATGAAAAGATTGTGCATTCTTTCAATAGCGGCATTCATGGGAACACGGAAAACTCTGGAAGTGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCTTTAAGAGAAGATGAGATAAGGACCAGTCTGGGAGAGCATTTCAGTTCTTGTGGACTAATTTCGAGGATATCAATTGCAAGAGATTATGACACTGGTTCTACTAAGGGGTATGCTTGGGTAGACTTCATGGACATTGATGGCTTAAACAAAGCACTAGAACTTGATGGAACTGAGGTTGGAGGTTATGTATTGTCAGTGGAGAAAAGAAGACCTCGGCGTTATATTCATGATGGTAGAGGTGGTGGTGATCAGTTAGGTGGATGGCGTGGTGGCGATCAATTTGGTGGATGGCGTGGTGGTGATCAATTTGGTGGGTGGCGTGGAGTTGGACAATGGGATCAGGGAAGAGGTTATGGCAGGAGGTGGCATTGA 870 0.431 MLNGKELLRRSLRLDLAHERGVYSHSSKNESSQEDKSLGGNEAKMPAAPKEQNATSKTVFVGNLSYSVERADLENLFKDCGEIIDIRLATDREGRFKGFGHIEFATYEAAQTALKLNGSELLRQYIRLDLAHEKIVHSFNSGIHGNTENSGSVESQTVFVRGFDTSLREDEIRTSLGEHFSSCGLISRISIARDYDTGSTKGYAWVDFMDIDGLNKALELDGTEVGGYVLSVEKRRPRRYIHDGRGGGDQLGGWRGGDQFGGWRGGDQFGGWRGVGQWDQGRGYGRRWH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2826g00002 289 MobiDBLite consensus disorder prediction 23 54 - -
Pral2826g00002 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 126 IPR000504 GO:0003723
Pral2826g00002 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 230 IPR000504 GO:0003723
Pral2826g00002 289 SUPERFAMILY RNA-binding domain, RBD 152 266 IPR035979 GO:0003676
Pral2826g00002 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 133 IPR000504 GO:0003723
Pral2826g00002 289 Gene3D - 17 138 IPR012677 -
Pral2826g00002 289 MobiDBLite consensus disorder prediction 23 37 - -
Pral2826g00002 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 156 258 - -
Pral2826g00002 289 Gene3D - 140 287 IPR012677 -
Pral2826g00002 289 SMART rrm1_1 157 233 IPR000504 GO:0003723
Pral2826g00002 289 SMART rrm1_1 58 129 IPR000504 GO:0003723
Pral2826g00002 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 237 IPR000504 GO:0003723
Pral2826g00002 289 SUPERFAMILY RNA-binding domain, RBD 49 146 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2826g00002 Pral-Chr2826 1784 8686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2826g00002 46 235 Eukaryotic Initiation Factors Gene Family AT1G22760 27.273 2.03e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2826g00002 K11294 - pcin:129311628 433.721