Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2826g00001 ATGTTGAACGGGAAAGAACTGTTGAGACGTTCTCTCAGGCTTGATCTAGCTCATGAAAGGGGTGTATATTCCCACAGTAGCAACAACAGGAATGAATCATCCCAGGAGGATAAATCGTTAGGAGGGAATGAGGCTAAAATGCCAGCTGCTCCAAAAGAACAAAATGCCACATCAAAGACAGTATTTGTTGGAAACCTGTCGTATAGCGTGGAAAGGGCTGATTTGGAAAATTTGTTTAAAGATTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTCGGACATATTGAGTTTGCCACTTATGAAGCGGCACAAACTGCCCTTAAGTTGAATGGAAGCGAACTGTTGAGACAATATATAAGGCTTGATTTGGCTCATGAAAAGATTGTGCATTCTTTCAATAGCGGCATTCATGGGAACACGGAAAACTCTGGAAGTGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCTTTAAGAGAAGATGAGATAAGGACCAGTCTGGGAGAGCATTTCAGTTCTTGTGGACTAATTTCGAGGATATCAATTGCAAGAGATTATGACACTGGTTCTACTAAGGGGTATGCTTGGGTAGACTTCATGGACATTGATGGCTTAAACAAAGCACTAGAACTTGATGGAACTGAGGTTGGAGGTTATGTATTGTCAGTGGAGAAAAGAAGACCTCGGCGTTATATTCATGATGGTAGAGGTGGTGGTGATCAGTTAGGTGGATGGCGTGGTGGCGATCAATTTGGTGGATGGCGTGGTGGTGATCAATTTGGTGGGTGGCGTGGAGTTGGACAATGGGATCAGGGAAGAGGTTATGGCAGGAGGTGGCATTGA 876 0.4315 MLNGKELLRRSLRLDLAHERGVYSHSSNNRNESSQEDKSLGGNEAKMPAAPKEQNATSKTVFVGNLSYSVERADLENLFKDCGEIIDIRLATDREGRFKGFGHIEFATYEAAQTALKLNGSELLRQYIRLDLAHEKIVHSFNSGIHGNTENSGSVESQTVFVRGFDTSLREDEIRTSLGEHFSSCGLISRISIARDYDTGSTKGYAWVDFMDIDGLNKALELDGTEVGGYVLSVEKRRPRRYIHDGRGGGDQLGGWRGGDQFGGWRGGDQFGGWRGVGQWDQGRGYGRRWH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2826g00001 291 Gene3D - 146 289 IPR012677 -
Pral2826g00001 291 MobiDBLite consensus disorder prediction 22 56 - -
Pral2826g00001 291 MobiDBLite consensus disorder prediction 22 40 - -
Pral2826g00001 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 239 IPR000504 GO:0003723
Pral2826g00001 291 SMART rrm1_1 159 235 IPR000504 GO:0003723
Pral2826g00001 291 SMART rrm1_1 60 131 IPR000504 GO:0003723
Pral2826g00001 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 128 IPR000504 GO:0003723
Pral2826g00001 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 232 IPR000504 GO:0003723
Pral2826g00001 291 SUPERFAMILY RNA-binding domain, RBD 154 268 IPR035979 GO:0003676
Pral2826g00001 291 Gene3D - 18 140 IPR012677 -
Pral2826g00001 291 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 158 260 - -
Pral2826g00001 291 SUPERFAMILY RNA-binding domain, RBD 51 148 IPR035979 GO:0003676
Pral2826g00001 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 135 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2826g00001 Pral-Chr2826 1784 8686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2826g00001 48 237 Eukaryotic Initiation Factors Gene Family AT1G22760 27.273 2.74e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2826g00001 K11294 - pcin:129311628 427.557