Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2824g00004 ATGGACCTCAAGTGTATTACAAATGGGCATCAGAAAATGAGTAGCCTGGTTGAGAGACTTCGTGTAAGATCAGATCGCAAGCCAGTTTATAATCTAGATGACTCAGATGATGAAGCTGACTTTTTGCCTGGGAAACCTGGTAGAACTGAGGAAAATTTTGAGAGGATAGTTAGAAGTGATACTAAAGAAAATTCATGCCAAGCCTGTGGAGAAAGTGAAGATCTTCTTAGCTGTGAAACTTGTACTTATGCTTTCCATCCTAAGTGTTTGCTTCGACCACTTAAACCTCCACTTCCAGATAATTGGAGATGCCCTGAATGTGTTAGCCCATTAAGTGATATTGAGAAGATATTAGATTGTGAAATGCGCCCAACTGTAGCTGGTGATGGTGAGGCCTCAAAACCGTGTTCAAAGCAAATTTTTGTTAAACAGTATCTTGTGAAGTGGAAGGGACTTTCATATCTGCACTGCACGTGGGTTTCAGAGAAAGAGTTTCTGAAAGCCTTCAAGTCACATCCCCGTCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCTGCAAATACTACTGAGGATGACTTTGTTGCCATTCGACCTGAATGGACCATGGTTGATCGTATACTTGCTTGCAGGGGTCGTGATGATGGGAAGGAGTATCTTGTGAAATGGAAAGAGCTTCCATATGATGAATGTTATTGGGAGTCTGAGTCTGACATTTCTGCATTCCAGCCAGAAATAGAAAGATTTACCAAATTTCAGTCAAGGTCTAGGAGAAGTGCTTCTAGTAAGCAGAAAAGTAGTGGTAAGGATGGTTCCGAAGAAAAAAAGCAGCTGAAAGAATTTCAACACTATGAACATAGCCCCAGCTTTCTTTCAGGCGGCACCCTACATCCATATCAGCTTGAAGGCTTGAACTTCTTACGTTTCTCCTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTAGGCAAAACCATACAAAGTATTGCTTTTTTAGCATCTCTTTTTGAAGAGAGAGTGTTTCCCCATTTAGTGGTTGCTCCCTTGTCAACTCTCCGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGATCTGCTCAAGCTCGAGCTGTTATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAGACATGGCAAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGACGTCCTTTTGACATCATACGAAATGATCAACTTCGACTCTGCATCGTTGAAACCTATAATGTGGGACTGCATTATAGTTGATGAAGGTCACCGACTCAAGAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCAAGCAGACATCGTGTACTTTTGACTGGGACTCCTCTTCAGAACAATTTGGATGAACTTTTTATGCTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCTTAGAGGAGTTCCAGGAAGAGTTCAAAGATATTAATCAGGAGGAGCAGATATCAAGGCTTCACAGAATGTTGGCTCCACATCTCCTCCGAAGAGTGAAGAAAGATGTCATGAAGGAGCTACCTCCTAAAAAGGAACTTATTTTAAGAGTTGAGCTAAGCAGCAAACAGAAAGAGTATTACAAGGCAATTTTGACGCGTAATTATCAAATATTAACTCGTCGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAATTGCGCAAACTATGTTGTCATCCTTACATGTTGGAAGGAGTTGAGCCAGATATTGAAGATCCAAAAGAATCATACAAACAGCTGCTAGAGTCATCAGGGAAGTTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAGGAGCAAGGACATAGGGTCCTCATATACTCACAATTTCAGCACATGCTTGACCTGTTAGAAGATTACTGTTCTTACAAGAATTGGCACTATGAAAGGATAGATGGCAAGGTTGCTGGAGCTGAAAGACAGATCAGGATAGATCGGTTTAATGCCAAAAATTCCTCAAGATTTTGCTTTCTTCTTTCTACCAGAGCTGGAGGATTGGGAATAAACCTAGCAACTGCTGACACAGTTATTATTTATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCACCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGGAACCATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATTTGGTTGTTGGAAGGCTAAAGGCTCAAAACATTAATCAGGAAGAGTTGGATGATATCATTAGGTATGGCTCAAAGGAGTTATTTGCTGATGAGAATGATGAAGCTGGCAAATCCCGCCAAATTCATTATGATGATGCTTCAATAGATAGATTGTTGGATCGTGAGCAAGTTGGCGTTGAAGAAGCTGTGTTGGATGATGAAGATGATGATGGATTTCTGAAGGCATTTAAGGTGGCAAATTTTGAATATATTGATGAAGTTGAGGCTGCAGCAGAGGAGGCAAGGAAAAAAGAAATGGAAAAAAAGAAAACCGTTAACAACTCAGATAGGGCAAATTACTGGGAGGATTTGTTGAGAGACAGATATAAAGAGCATAAAACTGAAGAGTTTAGTTCGTTGGGCAAGGGCAAGCGAAATCGCAAGCTGATGGCTTCTGTTGAGGAGGATGATCTTGCTGGCCTAGAAGATGTAAGTTCTGATGGTGAAGATGACAACTATGAGGCAGACCTTACTGATGGTGATTCAAATTCAACTGGAACTACTTCTGGGAGAAGGCCTTACAGAAAGAAAGCCCGTGCAGATAGTACAGAGCCACTTCCTTTGATGGAAGGTGAAGGAAAATCATTCAGAGTACTTGGTTTCAATCAAAGCCAGAGGGCTCAATTTGTGCAAATTTTGATGAGGTTTGGAGTTGGTGATTATGATTGGAAGGAGTTTACTCCCCGCTTGAAACAGAAGACATATGAAGAAATCAAAGATTATGGATTCCTTTTCTTGTCTCATATCGCTGAAGATATAACTGATTCTCCTACATTCTCAGACGGTGTTCCAAAGGAAGGACTTAGAATACATGATGTATTAGTGAGGATTGCAGTTCTTCTCTTGATAAGGGACAAGGTGAAGTTTGCATCAGAGAAGGATCCTGGAACTTTGCTTTACACAGATGACATCTTGTTGCGGTATCCTGGTTTAAAGGGTGGAAAGATATGGAAGGAGGAGCATGATATAGTGTTACTGCGTGCTGTGTTGAAGCATGGATATGGAAGGTGGCAAGCAATTGTGGATGATAAGGATCTAAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCATGGTAAATCTACCATTACCAGGACAAGTTAGTACCCAGACACAAAATGGTGCAAATTCAACAAACGTAGAAGCACTGGCCAACCAATCTGGGGAAAATGGTGGGAATGGTATGGTAGCTGATGGTGCACCTGGTTCTGGTGATGCTAGGAACCAAACACAGCTATATCAAGAGTCTTCAATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTAAAAAAGAGGGTTCTTCTGTTGGAAAAGGGCTCTATGCTGAGTACCAGAAAGAATACTTCGTCTTTATCTAAAAATGAAGATATAGTTGATGCTGGTGACCAAATGAAGCCATGA 3756 0.405 MDLKCITNGHQKMSSLVERLRVRSDRKPVYNLDDSDDEADFLPGKPGRTEENFERIVRSDTKENSCQACGESEDLLSCETCTYAFHPKCLLRPLKPPLPDNWRCPECVSPLSDIEKILDCEMRPTVAGDGEASKPCSKQIFVKQYLVKWKGLSYLHCTWVSEKEFLKAFKSHPRLKTKVNNFHRQMASANTTEDDFVAIRPEWTMVDRILACRGRDDGKEYLVKWKELPYDECYWESESDISAFQPEIERFTKFQSRSRRSASSKQKSSGKDGSEEKKQLKEFQHYEHSPSFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEERVFPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARAVIREYEFYFPKKQKKIKKKRHGKIVSESKQDRIKFDVLLTSYEMINFDSASLKPIMWDCIIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDPKESYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWHYERIDGKVAGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDASIDRLLDREQVGVEEAVLDDEDDDGFLKAFKVANFEYIDEVEAAAEEARKKEMEKKKTVNNSDRANYWEDLLRDRYKEHKTEEFSSLGKGKRNRKLMASVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTTSGRRPYRKKARADSTEPLPLMEGEGKSFRVLGFNQSQRAQFVQILMRFGVGDYDWKEFTPRLKQKTYEEIKDYGFLFLSHIAEDITDSPTFSDGVPKEGLRIHDVLVRIAVLLLIRDKVKFASEKDPGTLLYTDDILLRYPGLKGGKIWKEEHDIVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPMVNLPLPGQVSTQTQNGANSTNVEALANQSGENGGNGMVADGAPGSGDARNQTQLYQESSILYHFRDMQRRQVEFVKKRVLLLEKGSMLSTRKNTSSLSKNEDIVDAGDQMKP 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2824g00004 1251 MobiDBLite consensus disorder prediction 1229 1251 - -
Pral2824g00004 1251 SMART helicmild6 650 734 IPR001650 -
Pral2824g00004 1251 SMART DUF1086_2 924 1084 IPR009462 GO:0003677|GO:0006338
Pral2824g00004 1251 Coils Coil 850 873 - -
Pral2824g00004 1251 Gene3D - 192 253 - -
Pral2824g00004 1251 Pfam CHD subfamily II, SANT-like domain 947 1073 IPR009462 GO:0003677|GO:0006338
Pral2824g00004 1251 ProSitePatterns Zinc finger PHD-type signature. 66 107 IPR019786 -
Pral2824g00004 1251 ProSiteProfiles Chromo and chromo shadow domain profile. 112 194 IPR000953 -
Pral2824g00004 1251 SMART chromo_7 111 180 IPR000953 -
Pral2824g00004 1251 SMART chromo_7 202 256 IPR000953 -
Pral2824g00004 1251 Pfam PHD-finger 66 108 IPR019787 -
Pral2824g00004 1251 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 310 496 IPR014001 -
Pral2824g00004 1251 MobiDBLite consensus disorder prediction 1165 1188 - -
Pral2824g00004 1251 SMART ultradead3 294 507 IPR014001 -
Pral2824g00004 1251 MobiDBLite consensus disorder prediction 915 966 - -
Pral2824g00004 1251 SUPERFAMILY Chromo domain-like 78 189 IPR016197 -
Pral2824g00004 1251 MobiDBLite consensus disorder prediction 915 936 - -
Pral2824g00004 1251 Pfam Helicase conserved C-terminal domain 621 734 IPR001650 -
Pral2824g00004 1251 Pfam CHD subfamily II, DUF1087 855 916 IPR009463 -
Pral2824g00004 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 789 IPR027417 -
Pral2824g00004 1251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 111 IPR013083 -
Pral2824g00004 1251 Gene3D - 112 187 - -
Pral2824g00004 1251 CDD CD2_tandem 202 251 - -
Pral2824g00004 1251 Gene3D - 1050 1172 - -
Pral2824g00004 1251 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 624 785 IPR001650 -
Pral2824g00004 1251 CDD PHD_SF 65 107 - -
Pral2824g00004 1251 ProSiteProfiles Rubredoxin-like domain profile. 73 117 IPR024934 GO:0005506
Pral2824g00004 1251 SUPERFAMILY Chromo domain-like 196 256 IPR016197 -
Pral2824g00004 1251 CDD SF2_C_SNF 619 745 - -
Pral2824g00004 1251 Gene3D - 290 540 IPR038718 -
Pral2824g00004 1251 ProSiteProfiles Chromo and chromo shadow domain profile. 204 266 IPR000953 -
Pral2824g00004 1251 MobiDBLite consensus disorder prediction 255 278 - -
Pral2824g00004 1251 CDD CD1_tandem 114 184 - -
Pral2824g00004 1251 Pfam SNF2-related domain 318 598 IPR000330 GO:0005524|GO:0140658
Pral2824g00004 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 531 IPR027417 -
Pral2824g00004 1251 SMART DUF1087_2 854 919 IPR009463 -
Pral2824g00004 1251 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 27 1207 - -
Pral2824g00004 1251 SMART PHD_3 65 108 IPR001965 -
Pral2824g00004 1251 ProSiteProfiles Zinc finger PHD-type profile. 63 110 IPR019787 -
Pral2824g00004 1251 Gene3D - 541 765 IPR027417 -
Pral2824g00004 1251 Pfam Chromo (CHRromatin Organisation MOdifier) domain 205 253 IPR023780 -
Pral2824g00004 1251 Pfam Chromo (CHRromatin Organisation MOdifier) domain 114 168 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2824g00004 Pral-Chr2824 15656 31614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2824g00004 320 795 RAD5 or RAD16-like Gene Family AT1G02670 22.662 8.69e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral2824g00004 SNF2_N 9.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2824g00004 K11643 - gmx:100790230 2046.17