Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2795g00016 ATGGCACTTCCACTTCCATTCTCGTTCACATTTCTCCTCCTACTTCTGGCTCCTTCCTTCGTTTTCTCTTCCCCACTTCAAGATCCAGAATTAGTAGTCGAACAAGTACACAAGAGCATGAACGCGTCGAGGAGAAACTTGGGGTTTCTTTCCTGTGGAACTGGGAACCCCATTGATGATTGCTGGAGGTGTGACGCCAACTGGGAGAAGAACAGAAATCGTCTGGCAGATTGCGGCATTGGGTTCGGAAAGAACGCCATCGGAGGCAGAGACGGCAGATACTACGTCGTCACCGACCCCGGCGACCACCCCGTGAATCCCAAGCCAGGAACCCTCAGATACGGCGTTATACAGAAGGAGCCACTGTGGATCATCTTCAAGAAAGACATGGTCATCAAGCTCAAAGAAGAACTGATCATGAACTCCTTCAAGACCATCGATGGCAGAGGAGCCAATGTTCACATCGCAGGGGGTCCTTGCATCACAATACAGTTCGTAACCAACGTCATTATCCACGGAATCAACATTCACGACTGTAAACGAGGAGGTAACGCCTACGTACGAGATTCTCCGACACATTACGGTTGGAGAACGGTGTCGGACGGCGACGGAGTTTCCATTTTCGGAGGAAGCCATATCTGGGTGGACCACTGTTCCCTGTGGAATTGCGAAGATGGACTGATCGATGCGATTCATGGGTCCACGGCAATCACAATCTCAAGCAATTACATGACCCGCCATGACAAGGTGATGCTTCTGGGTCACAGTGACAGTTACACGCAGGACAAGAACATGCAGGTCACGATTGCCTTCAACCATTTCGGTAAAGGTTTAGTCCAAAGAATGCCAAGGTGTAGACATGGGTACTTCCATGTGGTAAACAATGACTACACCCAGTGGGAGAAGTATGCGATAGGAGGGAGTGCGAATCCAACTATAAACAGTCAAGGCAACAGATTTCTTGCTCCTAATGACGGCACCGTCAAAGAGGTGACGAAGAGGGAGAATTCGCCGGAGAGTGAATGGGAGAACTGGAACTGGAGGTCGTCGGGGGATCTAATGCTAAACGGTGCGTTTTTCACGCCGTCAGGGAAAGGAGCATCTTCAAGCTATGCTCGAGCTTCAAGTCTCTCTGCAAAATCTTCTTCTTTGATTGGCTCTATAACAGCATCGGCTGGAGCACTTAAATGCCCAAAGGGCTCTCGTTGCTGA 1212 0.4983 MALPLPFSFTFLLLLLAPSFVFSSPLQDPELVVEQVHKSMNASRRNLGFLSCGTGNPIDDCWRCDANWEKNRNRLADCGIGFGKNAIGGRDGRYYVVTDPGDHPVNPKPGTLRYGVIQKEPLWIIFKKDMVIKLKEELIMNSFKTIDGRGANVHIAGGPCITIQFVTNVIIHGINIHDCKRGGNAYVRDSPTHYGWRTVSDGDGVSIFGGSHIWVDHCSLWNCEDGLIDAIHGSTAITISSNYMTRHDKVMLLGHSDSYTQDKNMQVTIAFNHFGKGLVQRMPRCRHGYFHVVNNDYTQWEKYAIGGSANPTINSQGNRFLAPNDGTVKEVTKRENSPESEWENWNWRSSGDLMLNGAFFTPSGKGASSSYARASSLSAKSSSLIGSITASAGALKCPKGSRC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2795g00016 403 SUPERFAMILY Pectin lyase-like 41 397 IPR011050 -
Pral2795g00016 403 Gene3D - 55 396 IPR012334 -
Pral2795g00016 403 SMART amb_all 129 326 IPR002022 -
Pral2795g00016 403 FunFam Pectate lyase 55 396 - -
Pral2795g00016 403 Pfam Pectate lyase 135 320 IPR002022 -
Pral2795g00016 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Pral2795g00016 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Pral2795g00016 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Pral2795g00016 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Pral2795g00016 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Pral2795g00016 403 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Pral2795g00016 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Pral2795g00016 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Pral2795g00016 403 PANTHER PECTATE LYASE 18-RELATED 27 401 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2795g00016 Pral-Chr2795 155915 157550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2795g00016 5 403 Polysaccharide Lyase AT5G63180 76.485 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2795g00016 K01728 - gmx:100816256 692.575