Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2795g00015 ATGGCAATTCCGTTCTCATTTCTCCTCCTCCTCCTCCTCGCTCCTTCCTTCATTTTCTGTTCCACGCTTCAAGATCCACACTTGGTAGTCGAACAAGTGCACAAGAGCATCAATGCGTCGAGAAGAAATCTGGGGTTTCTTTCTTGCGGAACTGGGAATCCCGTTGATGATTGTTGGAGGTGTGACCCCAACTGGGAGAAGAACAGAAAGCGTCTGGCGGATTGCGGCATTGGGTTCGGCAAGAACGCCATCGGAGGCAGAGACGGCAGATACTACGTCGTCACCGACCCCGGCGACCACCCCGTGAGTCCCAAGCCAGGAACCCTCAGATACGGCGTCATACAGAAGGAGCCACTGTGGATCATCTTCAAGAAAGACATGGTCATCAAGCTCAAAGAAGAACTGATCATGAACTCCTTCAAGACCATCGATGGCAGAGGAGCCAATGTTCACATCGCAGGGGGCCCTTGCATTACTATCCAGTTCGTTACCAACGTCATTATCCACGGAATCAACATTCACGACTGTAAACGAGCAGGTAACGCCTACGTACGAGATTCTCCGACACATTACGGTTGGAGAACGGTGTCGGACGGCGACGGAGTTTCCATTTTCGGAGGAAGCCACATATGGGTGGACCACTGTTCTCTGTGGAATTGCGAAGATGGACTGATCGATGCGGTTCAAGGATCGACGGCAATCACAATCTCAAACAATTACATGACTCGCCATGACAAGGTGATGCTTCTGGGTCACAGTGACAGTTACACGAAGGACAAGAACATGCAGGTCACCATAGCCTTCAACCATTTCGGCAAAGGCTTAGTCCAGAGAATGCCAAGATGCAGGCATGGGTACTTCCACGTGGTAAACAATGACTACACTCAGTGGGGCATGTATGCGATAGGAGGGAGTGCGAATCCAACTATATACAGTCAGGGAAACAGATTTCTTGCTTCTAATGACGGAACCTTAAAAGAGGTGACCAAGAGGGAGAATTCGCCGGAGAGTGAATGGAAGAACTGGAACTGGAGGTCGTCGGGGGATCTGATGGTAAACGGTGCGTTTTTCACGCCGTCAGGGAAGGGAGCATCTTCAAGCTATGCTAGAGCTTCAAGTCTGTCTGCAAAATCGTCGTCTTTGGTTGGATCTATAACAGCCTCGGCTGGAGCACTTAAATGCACAAAGGGCTCTCGTTGCTGA 1203 0.5037 MAIPFSFLLLLLLAPSFIFCSTLQDPHLVVEQVHKSINASRRNLGFLSCGTGNPVDDCWRCDPNWEKNRKRLADCGIGFGKNAIGGRDGRYYVVTDPGDHPVSPKPGTLRYGVIQKEPLWIIFKKDMVIKLKEELIMNSFKTIDGRGANVHIAGGPCITIQFVTNVIIHGINIHDCKRAGNAYVRDSPTHYGWRTVSDGDGVSIFGGSHIWVDHCSLWNCEDGLIDAVQGSTAITISNNYMTRHDKVMLLGHSDSYTKDKNMQVTIAFNHFGKGLVQRMPRCRHGYFHVVNNDYTQWGMYAIGGSANPTIYSQGNRFLASNDGTLKEVTKRENSPESEWKNWNWRSSGDLMVNGAFFTPSGKGASSSYARASSLSAKSSSLVGSITASAGALKCTKGSRC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2795g00015 400 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Pral2795g00015 400 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Pral2795g00015 400 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Pral2795g00015 400 PRINTS Pollen allergen Amb family signature 342 366 IPR018082 -
Pral2795g00015 400 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Pral2795g00015 400 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Pral2795g00015 400 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Pral2795g00015 400 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Pral2795g00015 400 Gene3D - 52 393 IPR012334 -
Pral2795g00015 400 FunFam Pectate lyase 52 393 - -
Pral2795g00015 400 Pfam Pectate lyase 132 317 IPR002022 -
Pral2795g00015 400 SMART amb_all 126 323 IPR002022 -
Pral2795g00015 400 SUPERFAMILY Pectin lyase-like 53 391 IPR011050 -
Pral2795g00015 400 PANTHER PECTATE LYASE 18-RELATED 24 398 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2795g00015 Pral-Chr2795 147916 149334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2795g00015 3 400 Polysaccharide Lyase AT5G63180 75.434 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2795g00015 K01728 - gmx:100816256 701.819