Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2795g00012 ATGAACCTAGGTATAAACTCTCTCTCATTCAGTGATGGAGCATCTATAGATATTGTGCAAACTAGAAACTCTAAACTTCTTTGTGCTAGCTCTTCTCAAGCTCTAGAATTAAAGGATGTTCTAGTTGCTCCAAAGATAGCTAAGAATCTGATTAGTGGCTATAAATTTACTAATGATAATGCAAATGTGTTTGTTGAAATTCACTCGCATGGGTGTTTTGTGAAGGACAAGAGTCACCATAAGGTCCTACTTCAAGGGGTCACAACACGTGGTTCAACTCCCAGCTTATACAGAATTGACAATGCTGTGGTTCCTACTAGAAGTATTACTGTTGCACATTTTGTCTTGGCTCGAAAGCAGCATGAGTTAGATGGGAAGTGTCAATCTAACAATTCACATTGCAAAAATCAAAATGGATTGCACAGAAGCGCCAATGCGTCGAGGAGAAATCTGGGTTTCGTGTCTTGTGGCACAGGCAACCCCATTGATGACTGTTGGAGATGCGATCCCAACTGGCACCACAATCGCCGGCGTCTCGCCGATTGCGCCATCGGCTTCGGCAGACACGCTGTGGGAGGCAGAGACGGCCGAACATACGTCGTCACCGACTCCAGCGACAACCCCATGAACCCTAAACCTGGAAGTTTACGATATGGCGTCATCCAAGAAGAACCCTTGTGGATCATCTTCGAAAGGGATATGAGCATTAGGCTCAAGATGGACCTCCTTGTCAATTCCTACAAAACAATCGACGGCCGAGGAGCCACTGTCCACATCGCCGGAGGACCTTGCATCAAAATACGGCGACAGACCAACATCATCATTCACGGATTGCACATCCACGACTGCGTACGAGGGAACTCTGGGTATGTGAGGCTATCCCCCCGTCGTTATACATTCAGTTCGAGGTCTGACGGCGATGGGGTTTCGATCTACGGCGGGAGCCATGTGTGGGTGGACCATTGCTTCTTGTCTAGGTGCTACGATGGGTTGATTGATGTGGTTCATGGATCGACGGCGATCACCATTTCTAACAATTACATGACCCACCATGAAAAAGCTATGCTTCTGGGACACAGCGATTCCTATGAGAAGGACCGGAATATGCAGGTCACCGTCGCCTACAATCATTTCGGAGAAGGGCTTGGAGGAAGAATGCCCAGATGCAGGTTTGGATACTTTCATGTGGTGAACAATGATTACACCCATTGGAAGGAATACGCTATAGGAGGGAGCTCGAATCCCACTATTTTCAGCCAAGGCAACAGATTTCTTGCTCCAGATGATGGAGAACACAAAGAGGTGACAAAACACTTTGGGGCGTCGCATAGTGAGTGGGAGAGATGGAATTGGAAGTCGGAAGGAGATCTGATGTTGAATGGGGCATTCTTCAGATCATCTGGGGAATTAGGAGCGTCTTCTGTGTATAGCAAGACCTTGAGCTTGGCTGCCAGACCATCGGAGTTTGTGAGTTCAATGACCTCAGGAGCCGGACCTCTTGATTGCAGAAAGGGCACATTCTGCTGA 1527 0.4761 MNLGINSLSFSDGASIDIVQTRNSKLLCASSSQALELKDVLVAPKIAKNLISGYKFTNDNANVFVEIHSHGCFVKDKSHHKVLLQGVTTRGSTPSLYRIDNAVVPTRSITVAHFVLARKQHELDGKCQSNNSHCKNQNGLHRSANASRRNLGFVSCGTGNPIDDCWRCDPNWHHNRRRLADCAIGFGRHAVGGRDGRTYVVTDSSDNPMNPKPGSLRYGVIQEEPLWIIFERDMSIRLKMDLLVNSYKTIDGRGATVHIAGGPCIKIRRQTNIIIHGLHIHDCVRGNSGYVRLSPRRYTFSSRSDGDGVSIYGGSHVWVDHCFLSRCYDGLIDVVHGSTAITISNNYMTHHEKAMLLGHSDSYEKDRNMQVTVAYNHFGEGLGGRMPRCRFGYFHVVNNDYTHWKEYAIGGSSNPTIFSQGNRFLAPDDGEHKEVTKHFGASHSEWERWNWKSEGDLMLNGAFFRSSGELGASSVYSKTLSLAARPSEFVSSMTSGAGPLDCRKGTFC 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2795g00012 508 PANTHER PECTATE LYASE 18-RELATED 138 506 IPR045032 GO:0030570
Pral2795g00012 508 PRINTS Pollen allergen Amb family signature 479 502 IPR018082 -
Pral2795g00012 508 PRINTS Pollen allergen Amb family signature 182 199 IPR018082 -
Pral2795g00012 508 PRINTS Pollen allergen Amb family signature 241 257 IPR018082 -
Pral2795g00012 508 PRINTS Pollen allergen Amb family signature 385 404 IPR018082 -
Pral2795g00012 508 PRINTS Pollen allergen Amb family signature 305 326 IPR018082 -
Pral2795g00012 508 PRINTS Pollen allergen Amb family signature 407 426 IPR018082 -
Pral2795g00012 508 PRINTS Pollen allergen Amb family signature 205 230 IPR018082 -
Pral2795g00012 508 PRINTS Pollen allergen Amb family signature 449 473 IPR018082 -
Pral2795g00012 508 Gene3D - 159 501 IPR012334 -
Pral2795g00012 508 SUPERFAMILY Pectin lyase-like 160 499 IPR011050 -
Pral2795g00012 508 FunFam Pectate lyase 159 501 - -
Pral2795g00012 508 Pfam Pectate lyase 243 424 IPR002022 -
Pral2795g00012 508 SMART amb_all 233 430 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2795g00012 Pral-Chr2795 86692 94119 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2795g00012 140 508 Polysaccharide Lyase AT5G63180 69.169 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2795g00012 K01728 - gmx:100801136 613.224