Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2790g00001 ATGACAAGACAGAGGATAGAAATAAAGAAGATCGATAACATAACTGCGAGGCAAGTGACATTTTCAAAGAGAAGGAGAGGGCTATTCAAGAAGGCTCTAGAACTCTCGACTCTCTGTGATGCTGAGATTGCTCTCATAGTCTTTTCTTCCACTGGGAAGCTCTTCGAATATGCTAGCTCAAGTGTGCCGCAGGTTATTGAAAGATATGATCAGCACTCACAAATTGAGAGATTATATCATTCATCTGTTTTGATTGTTCTTGTTGAATTGGACACTTTCAGCAAGCTCAGCAAGGAAGAAGCCAATAGGGCTCAGGAACTGAAGCAGTTGAAGGGAGAAGAGCTTGAAGGATTGAACATAAATGAATTACAGAAGCTTGAAGAGCAATTAGAAAAAGGTTTGAAACGTGTTGTCGGAGCAAAGGATGACATAATGTTGAAAGAGATCGATGCGCTCAAGAGAAAGATCCAATTGGTGGAAGAGAATCAGCGATTAAATCAGTGA 504 0.4048 MTRQRIEIKKIDNITARQVTFSKRRRGLFKKALELSTLCDAEIALIVFSSTGKLFEYASSSVPQVIERYDQHSQIERLYHSSVLIVLVELDTFSKLSKEEANRAQELKQLKGEELEGLNINELQKLEEQLEKGLKRVVGAKDDIMLKEIDALKRKIQLVEENQRLNQ 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2790g00001 167 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pral2790g00001 167 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral2790g00001 167 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Pral2790g00001 167 FunFam Transcription factor, MADS-box 13 82 - -
Pral2790g00001 167 Coils Coil 96 116 - -
Pral2790g00001 167 Coils Coil 149 167 - -
Pral2790g00001 167 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral2790g00001 167 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral2790g00001 167 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral2790g00001 167 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 140 - -
Pral2790g00001 167 Pfam K-box region 93 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral2790g00001 167 Coils Coil 123 143 - -
Pral2790g00001 167 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral2790g00001 167 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pral2790g00001 167 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral2790g00001 167 ProSiteProfiles K-box domain profile. 86 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral2790g00001 167 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2790g00001 Pral-Chr2790 169 9008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2790g00001 1 167 MADS-box Gene Family AT2G22540 56.213 6.66e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral2790g00001 K-box 7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2790g00001 - - rcu:8266867 175.637