Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2788g00001 ATGGCGGAAGCTGCGGAGACCAAAGCAGTGGCTGAGGCAGAGAAGAAGAAGGAGCAGAGTTTATCCTTTTATCAGCTCTTCTCTTTTGCGGATAAGTATGACTGGTTGCTCATGATCTCTGGGAGCGTGGGAGCTATTGTTCATGGCTCCTCCATGCCGGTTTTCTTTCTTCTTTTCGGTGAAATGGTTAACGGGTTTGGCAAGAACCAGATGGATTTGAAGAAAATGACGGAAGAAGTATCAAAGTATGCTCTGTATTTTGTGTACCTTGGCCTTGTCGTTTGCATATCATCGTATGCGGAAATCGCTTGCTGGATGTATACCGGGGAGAGGCAAGTGAGCACGTTGAGGAAGAAGTATTTGGAGGCAGTGCTTAGACAGGACGTTGGTTTCTTCGACACGGACGCCAGAACAGGGGATATTGTTTTCAGTGTCTCCACTGATACTCTGCTTGTTCAAGATGCTATCAGCGAGAAGGTAGGGAACTTCATACACTATCTCTCAACTTTTCTGGCGGGTTTAGTGGTTGGTTTTGTGTCGGCATGGAGGCTGGCGCTTCTGAGTGTGGCGGTGATTCCAGGCATTGCTTTTGCCGGTGGCTTGTACGCTTATACACTCACTGGCCTCACTTCAAAGAGTCGCCAATCTTATGCCAATGCCGGCATAATCGCCGAGCAGGCAATTGCTCAAGTTCGAACTGTTTACTCATACGTCGGTGAGAGCAAGGCCCTTAATTCTTATTCTGATGCAATACAAAACACGCTGAAGCTGGGATACAAGGCTGGAATGGCCAAAGGTTTGGGTCTAGGATGCACATATGGGATAGCATGTATGTCCTGGGCTTTAGTCTTTTGGTATGCTGGCGTCTTTATCAGGAATGGACAGTCCGACGGAGGCAAGGCTTTTACCGCCATTTTCTCCGCCATTGTTGGTGGCATGAGTTTGGGGCAGTCGTTTTCTAATTTAGGGGCTTTCAGTAAAGGTAAAGCTGCAGGATTCAAGTTGATGGAGATAATCAAGCAGAGACCTTCCATAGTGGAAGACGCATCAGATGGAAAATGCTTGCCTGAGGTTCATGGGAATATCGAATTTAAAGATGTCACTTTCAGCTATCCATCCAGGCCCGATGTCATCATCTTTCGCGATTTCGCAATCTTTTTTCCTGCGGGGAAAACAGTGGCCGTTGTTGGCGGAAGTGGGTCTGGAAAGAGTACAGTGGTTTCACTGATAGAGAGGTTCTATGATCCTAATGAAGGGCAGGTTTTACTGGATAATGTAGACATTAAGACGCTAGGGTTAAAATGGTTACGTAGTCAAATCGGGCTGGTGAATCAAGAACCTGCACTGTTTGCAACTAGCATTCATGAGAATATACTCTACGGAAAACCTGATGCAACCATGGCTGAAGTAGAAGCTGCTGCTTCTGCTGCAAACGCTCATAGCTTCATTACCTTGCTTCCAAATGGCTATAATACTCAGGTGGGAGAGCGAGGAGTTCAATTATCAGGTGGTCAAAAACAGAGGATTGCAATAGCGAGAGCTATGTTGAAGAATCCAAAGATTCTTCTTTTAGATGAAGCCACCAGTGCTCTTGACGCAGGTTCTGAAAGTATTGTGCAAGAAGCACTGGACCGCCTTATGGTTGGTCGTACGACTGTAGTTGTCGCCCACCGTCTTTCCACCATAAGAAACGTAGACTCCATTGCCGTTATACAACAAGGACAAGTAGTTGAGACAGGGACGCATGAAGAGCTGATTGCCAAGGCCGGAACCTACGCGTCACTGATTAGATTCCAAGAAATGGTTGGAAACAGAGACTTGTCCAACCCATCAACTCGCCGGACTCGTTCATCTCGGTTGAGCCATTCGCTTTCGACCAAGTCTCTGAGCCTTCGGTCCGGGAGCTTGAGGAATCTGAGCTACCAGTACAGCACCGGTGCAGATGGTCGGATTGAGATGGTGTCAAATGCAGAAACGGACAAGAAAAATCCGGCTCCTCAGGGTTATTTCTTCCGACTGCTCAAGTTAAATGCCCCAGAGTGGCCCTACTCAATCATGGGAGCTGTAGGCTCTGTTCTTTCTGGGTTCATTGGCCCAACATTTGCCATTGTGATGAGCAATATGATCGAGGTATTTTACTATAAGAATTATGCATCCATGGAGAAAAAGACTAAGGAGTTTGTTTTCATATATATCGGAGCTGGTCTTTATGCCGTGGGTGCATATTTGATACAACATTACTTCTTCAGTATCATGGGGGAAAATCTCACCACAAGGGTTCGAAGAATGATGCTTGCCGCAATATTAAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAATTCAAGCCTGGTTGCAGCTAAGCTTGCGACGGATGCTGCTGATGTGAAGTCTGCTATTGCTGAGAGGATCTCAGTGATTCTGCAGAACATGACTTCTCTGCTAACTTCATTCATAGTAGCTTTTATCGTGGAATGGAGGGTTTCTTTGCTCATCCTCGCAACCTTCCCTTTACTGGTTCTGGCTAATTTTGCCCAGCAACTGTCACTGAAAGGGTTTGCAGGAGACACGGCGAAGGCACATGCAAAGACAAGTATGATCGCCGGAGAAGGAGTGAGCAACATCAGAACAGTCGCTGCTTTCAATGCTCAGAACAAGATCTTATCTCTCTTCTGCCACGAGCTTCGTGTCCCACAGCGCCGGAGCCTCCGTCGCAGCCAAACTTCCGGCCTCCTCTTCGGTGTCTCCCAGCTCGCTCTTTACGCCTCTGAAGCACTCATTCTCTGGTATGGTGCCCACCTCGTCAGCAAAGGTGTCTCCACCTTCTCCAAGGTCATCAAAGTTTTTGTCGTCCTCGTCATCACAGCTAATTCAGTTGCAGAAACTGTGAGTCTCGCTCCGGAGATCATCAGAGGTGGTGAAGCTGTCGGCTCCGTCTTCTCAATCCTCGACCGTCAAACGAGGATCGACCCAGATGATCCCGACGCCGACCCGGTGGAAACAGTTCGCGGAGAAATTGAACTCAGACACGTGGACTTCGCATACCCGTCACGACCCGACGTGATGGTGTTCAAAGATCTTAATCTCAGGATCCGCGCAGGGCAGAGTCAAGCTCTTGTGGGAGCAAGTGGGTCCGGCAAGAGTTCAGTGATCGCACTGATTGAACGTTTCTACGATCCAGTTGCAGGGAAAGTTATGATAGACGGAAGGGACGTTAAAAGACTAAATCTCAAGTCACTGAGGCTCAAGATCGGGCTAGTCCAACAAGAACCGGCCCTGTTCGCAGCAAGCATATTGGATAACATAGCCTACGGCAAAGAAGGCGCCACCGAAGCAGAGGTAATAGAAGCGGCGCGTGCAGCCAACGTGCACGCATTCGTGAGTAGTTTGCCAGAAGGCTACAAGACTCCAGTTGGGGAGAGAGGGGTTCAACTATCGGGGGGACAGAAACAGAGGATCGCCATAGCCAGGGCGGTTCTGAAGGACCCTGCAATACTGCTATTGGACGAGGCGACGAGTGCGCTTGATGCGGAGTCAGAATGTGTGCTTCAAGAAGCGTTAGAGAGGCTGATGAGGGGTCGAACCACCGTGCTTGTGGCTCACCGATTATCAACCATAAGAGGCGTCGACAGTATTGGGGTGGTGCAAGACGGACGCATCGTAGAACAGGGGAGCCACGGCGAGCTGGTTAGCCGACCGGAGGGCGCATATTCCAGACTCTTGCGGCTACAGCAGCATCGCATGTGA 3750 0.4899 MAEAAETKAVAEAEKKKEQSLSFYQLFSFADKYDWLLMISGSVGAIVHGSSMPVFFLLFGEMVNGFGKNQMDLKKMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLRQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRQSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGFKLMEIIKQRPSIVEDASDGKCLPEVHGNIEFKDVTFSYPSRPDVIIFRDFAIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKTLGLKWLRSQIGLVNQEPALFATSIHENILYGKPDATMAEVEAAASAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELIAKAGTYASLIRFQEMVGNRDLSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMVSNAETDKKNPAPQGYFFRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYKNYASMEKKTKEFVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAAKLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQRRSLRRSQTSGLLFGVSQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRQTRIDPDDPDADPVETVRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPVAGKVMIDGRDVKRLNLKSLRLKIGLVQQEPALFAASILDNIAYGKEGATEAEVIEAARAANVHAFVSSLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDSIGVVQDGRIVEQGSHGELVSRPEGAYSRLLRLQQHRM 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2788g00001 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2788g00001 1249 ProSitePatterns ABC transporters family signature. 1146 1160 IPR017871 GO:0005524|GO:0016887
Pral2788g00001 1249 FunFam ABC transporter B family member 19 352 600 - -
Pral2788g00001 1249 Gene3D - 352 600 IPR027417 -
Pral2788g00001 1249 FunFam ABC transporter B family member 1 664 973 - -
Pral2788g00001 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1245 IPR027417 -
Pral2788g00001 1249 Pfam ABC transporter 387 529 IPR003439 GO:0005524
Pral2788g00001 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Pral2788g00001 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 990 - -
Pral2788g00001 1249 CDD ABC_MTABC3_MDL1_MDL2 362 599 - -
Pral2788g00001 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1243 IPR003439 GO:0005524
Pral2788g00001 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 335 - -
Pral2788g00001 1249 FunFam ABC transporter B family member 19 997 1246 - -
Pral2788g00001 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 599 IPR027417 -
Pral2788g00001 1249 Coils Coil 1 21 - -
Pral2788g00001 1249 Gene3D - 1005 1247 IPR027417 -
Pral2788g00001 1249 MobiDBLite consensus disorder prediction 606 626 - -
Pral2788g00001 1249 Pfam ABC transporter transmembrane region 685 956 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2788g00001 1249 Pfam ABC transporter transmembrane region 43 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2788g00001 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2788g00001 1249 CDD ABC_MTABC3_MDL1_MDL2 1007 1245 - -
Pral2788g00001 1249 FunFam ABC transporter B family member 1 25 358 - -
Pral2788g00001 1249 SMART AAA_5 389 581 IPR003593 GO:0016887
Pral2788g00001 1249 SMART AAA_5 1034 1220 IPR003593 GO:0016887
Pral2788g00001 1249 SUPERFAMILY ABC transporter transmembrane region 26 347 IPR036640 GO:0005524|GO:0016020
Pral2788g00001 1249 Pfam ABC transporter 1026 1174 IPR003439 GO:0005524
Pral2788g00001 1249 Gene3D ABC transporter type 1, transmembrane domain 976 1004 IPR036640 GO:0005524|GO:0016020
Pral2788g00001 1249 SUPERFAMILY ABC transporter transmembrane region 666 991 IPR036640 GO:0005524|GO:0016020
Pral2788g00001 1249 PANTHER ABC TRANSPORTER B FAMILY 3 697 IPR039421 -
Pral2788g00001 1249 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Pral2788g00001 1249 FunFam ABC transporter B family member 19 974 996 - -
Pral2788g00001 1249 Gene3D ABC transporter type 1, transmembrane domain 25 974 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2788g00001 Pral-Chr2788 8781 15320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2788g00001 7 1246 Calmodulin-binding Proteins AT2G36910 53.535 0.0 1355