Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2787g00003 ATGATTATGGGAGACAATGTTGTGTCACCCGGTGCCTTGCTGGATCCGTCCATAGATTTTGATTACATGGACGAACTTTTCTCGGATGGATGCTGGTTGGAAACCGCTGCGGATGGATCTGATTTTTTGCTGCGAAGCCCTTCTGCGTCCAATCCCCTCTTTGACCCATCATTTTCATGGCCTGCTTTGGACACTAATGGGCATGTGAGTCTAGAACAAAGGCAGAGTCCATTTATTGACGACCACCAGGAAACACGAAATAATACTCGATCGGTTGGCAAGGGCAAGAACATGATAGATGTTGCTGATGCCTGTAATCCGTCTGAAACTCGTTCAGTTGAAAGCTCAGAAGTTGTTAAGAAGTTGTGGATTGGACCTATGGCTAATCCGAGCCCTGAATGTTCTGTATTGGAGAGACTAATTAAGGCTCTTGTGTACATCAGAGATTTCAATAGAGACAAAGATATGCTTTTACAAATATGGGTGCCGGTTAATAAGGAGGGTGGGAGGATTCTTAGCACTTGTGATCTTCCCTTCTCACTTGAAAGCAGCAGTCCGAATCTAGCTAAGTATCGAGAAATCTCTGCCAGATATCATTTTTCAGCTGAGGGGTATTCTAGGGGGTTGATGCCTGGATTGCCTGGTCGAGTTTTTAAAGAGAAGGTTCCTGAGTGGACTCCCGATGTTCGATTTTTCAGGAGTGATGAGTACCCTCGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGATCTTTAGCACTTCCAGTCTTTGGGCAGCATAGCAACGTTTGCTTGGGTGTTATTGAGGTTGTGATGACAGCCCAGCAGATCAAGTATTTCCCTGAGCTTGAGAGCGTTTGCAAAGCACTTCAGGCTGTTGATCTTAGAAGCAAAAATATTTCAAGAATACAGAATGTGAAGGCATGCAACAATTCCTATGAAGCTGCACTGCCTGAGATCCAAGAGGTTTTAAGATCGGCATGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGGTTGCATGTATCAAGCAAGGCAAAGAGGGGTGCCGGCACTCAGATGATAATTATCTACACTGTATATCTCCTGTTGAGCATGCTTGTTATGTTGGTGATCCTTGTGTCCAGGCTTTTCACGAGGCTTGCTCTGAGCATCACTTGTTAAAAGGTCAAGGAGTCACTGGTGAAGCTTTTTTGACCAATCAACCATGCTTCTCAACTGATGTAACTTCCTTTAGCAAGATAGATTATCCACTGTCTCATCATGCAAGGATTTTTGGGTTGCGAGCTGCTGTTGCTATACGCCTGCGAAGCATCCATAACAGTACAGATGACTTTGTACTCGAGTTCTTCTTGCCTGTAAATTGTTCTAACAGTGAAGAACAAAAGAAGATGCTCACTTCATTGTCTATGATTATACAAAAGGTTTGCCATAGCCTGCGGGTGATAACAAATAAAGAATTGGAGGAAGAAACCAGCTTATCAATTGATGAAGTGACAATCCCTGCAGAGAGTAGATCTGCTAGGATGGATTTCCAACAATGCAGGAACGTTACTTCACCTGGCACCAAAGAAAAGTCAAATGAGGCTTTGACTAGACAGGTGTCTAACCTGAGTCAGCAAGAAGACTCTATTTTAAAAGGAAACCTTGACTATGGTTGGGAGTGTTCTTCTTTTGGTGAGGGTGGCTTACCGATTGCAGGTTTAAGTAAAACGGGGGACAAAAGACGGACCAAAGCAGAGAAAACAATCACGTTGCAAGTTCTTCGGCAATATTTTGCAGGAAGCCTAAAAGATGCTGCAAAGAATATCGGTGTTTGTACTACAACTTTGAAAAGAATCTGTCGCCAACATGGAATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCAGTTCAAGGTGCCTCTAGCGCTTTTCAGATAGATTCTTTCTACTCAAAGTTTCCGGAGCTAGCATCTCCAAATTTGCCAGGAAGCAGCTTGGTCTCAACTTCAAAGCAAAGTGATCTTCCGAATCCATCAAGCTCAAGGCCTGATACTGGCTTGCAGAGCCCAGAAGCGCCCTCATCTTCATGCAATCAAAGTTCCAGTTCAAGCCATTCCTCTTCCAACATGTCAGAGTTACAGCTTCATGCACAAAATGTTAGAGGGGGAAAAGTTCCTAGGGTTAGAGAAGATTCTGGTGATGGGGCTATGAAGAGGATTCCAAGTGAAGTAAGGCTAAAAAGCTTAAGTCAAGATACAGCAGAGCTCTTGCCAACATCCCAAAGCCAGGAAATACTTTGTGAACCTGCAAAACCTGTGTTGAAAAGCAGTCATAAAGAACATCAAAAAGAAGATACTTACAGAGTAAAAGTCACTCTCAGAGAGGAGAAAACCCGGTTTCGGATGCCAAAGAGTTGGCATTATGAAGATCTTTTGTGGGAAATTGCTTGGCGATTCAACATAGACGACATGCGCAAATTCTATATCAAGTATCTGGACGATGACTCTGACTGGGTTTTGCTAACATGTGATGCTGATTTAGAGGAGTGCATTGATGTGTGTCGACATTCTCAGAGCAGTACCATCAAACTTTGCCTTCTGGATAGTAAATCATAG 2640 0.433 MIMGDNVVSPGALLDPSIDFDYMDELFSDGCWLETAADGSDFLLRSPSASNPLFDPSFSWPALDTNGHVSLEQRQSPFIDDHQETRNNTRSVGKGKNMIDVADACNPSETRSVESSEVVKKLWIGPMANPSPECSVLERLIKALVYIRDFNRDKDMLLQIWVPVNKEGGRILSTCDLPFSLESSSPNLAKYREISARYHFSAEGYSRGLMPGLPGRVFKEKVPEWTPDVRFFRSDEYPRVDHAQEYDVRGSLALPVFGQHSNVCLGVIEVVMTAQQIKYFPELESVCKALQAVDLRSKNISRIQNVKACNNSYEAALPEIQEVLRSACEMHKLPLAQTWVACIKQGKEGCRHSDDNYLHCISPVEHACYVGDPCVQAFHEACSEHHLLKGQGVTGEAFLTNQPCFSTDVTSFSKIDYPLSHHARIFGLRAAVAIRLRSIHNSTDDFVLEFFLPVNCSNSEEQKKMLTSLSMIIQKVCHSLRVITNKELEEETSLSIDEVTIPAESRSARMDFQQCRNVTSPGTKEKSNEALTRQVSNLSQQEDSILKGNLDYGWECSSFGEGGLPIAGLSKTGDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLVSTSKQSDLPNPSSSRPDTGLQSPEAPSSSCNQSSSSSHSSSNMSELQLHAQNVRGGKVPRVREDSGDGAMKRIPSEVRLKSLSQDTAELLPTSQSQEILCEPAKPVLKSSHKEHQKEDTYRVKVTLREEKTRFRMPKSWHYEDLLWEIAWRFNIDDMRKFYIKYLDDDSDWVLLTCDADLEECIDVCRHSQSSTIKLCLLDSKS 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2787g00003 879 ProSiteProfiles RWP-RK domain profile. 570 651 IPR003035 -
Pral2787g00003 879 Pfam RWP-RK domain 583 631 IPR003035 -
Pral2787g00003 879 SMART PB1_new 794 877 IPR000270 GO:0005515
Pral2787g00003 879 Gene3D - 790 875 - -
Pral2787g00003 879 ProSiteProfiles PB1 domain profile. 794 877 IPR000270 GO:0005515
Pral2787g00003 879 PANTHER PROTEIN NLP8 73 874 IPR045012 GO:0003700
Pral2787g00003 879 Pfam PB1 domain 794 874 IPR000270 GO:0005515
Pral2787g00003 879 SUPERFAMILY CAD & PB1 domains 784 877 - -
Pral2787g00003 879 MobiDBLite consensus disorder prediction 672 724 - -
Pral2787g00003 879 MobiDBLite consensus disorder prediction 672 751 - -
Pral2787g00003 879 CDD PB1_NLP 796 874 IPR034891 -
Pral2787g00003 879 MobiDBLite consensus disorder prediction 731 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2787g00003 Pral-Chr2787 19019 25144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2787g00003 18 874 NLP Transcription Factor Family AT1G20640 49.364 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pral2787g00003 PB1 1.4e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2787g00003 - - gmx:100790922 1074.69