Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2787g00002 ATGATTATGGGAGACAATGTTGTGTCACCCGGTGCCTTGCTGGATCCGTCCATAGATTTTGATTACATGGACGAACTTTTCTCGGATGGATGCTGGTTGGAAACCGCTGCGGATGGATCTGATTTTTTGCTGCGAAGCCCTTCTGCGTCCAATCCCCTCTTTGACCCATCATTTTCATGGCCTGCTTTGGACACTAATGGGCATGTGAGTCTAGAACAAAGGCAGAGTCCATTTATTGACGACCACCAGGAAACACGAAATAATACTCGATCGGTTGGCAAGGGCAAGAACATGATAGATGTTGCTGATGCCTGTAATCCGTCTGAAACTCGTTCAGTTGAAAGCTCAGAAGTTGTTAAGAAGTTGTGGATTGGACCTATGGCTAATCCGAGCCCTGAATGTTCTGTATTGGAGAGACTAATTAAGGCTCTTGTGTACATCAGAGATTTCAATAGAGACAAAGATATGCTTTTACAAATATGGGTGCCGGTTAATAAGGAGGGTGGGAGGATTCTTAGCACTTGTGATCTTCCCTTCTCACTTGAAAGCAGCAGTCCGAATCTAGCTAAGTATCGAGAAATCTCTGCCAGATATCATTTTTCAGCTGAGGGGTATTCTAGGGGGTTGATGCCTGGATTGCCTGGTCGAGTTTTTAAAGAGAAGGTTCCTGAGTGGACTCCCGATGTTCGATTTTTCAGGAGTGATGAGTACCCTCGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGATCTTTAGCACTTCCAGTCTTTGGGCAGCATAGCAACGTTTGCTTGGGTGTTATTGAGGTTGTGATGACAGCCCAGCAGATCAAGTATTTCCCTGAGCTTGAGAGCGTTTGCAAAGCACTTCAGGCTGTTGATCTTAGAAGCAAAAATATTTCAAGAATACAGAATGTGAAGCAGGCATGCAACAATTCCTATGAAGCTGCACTGCCTGAGATCCAAGAGGTTTTAAGATCGGCATGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGGTTGCATGTATCAAGCAAGGCAAAGAGGGGTGCCGGCACTCAGATGATAATTATCTACACTGTATATCTCCTGTTGAGCATGCTTGTTATGTTGGTGATCCTTGTGTCCAGGCTTTTCACGAGGCTTGCTCTGAGCATCACTTGTTAAAAGGTCAAGGAGTCACTGGTGAAGCTTTTTTGACCAATCAACCATGCTTCTCAACTGATGTAACTTCCTTTAGCAAGATAGATTATCCACTGTCTCATCATGCAAGGATTTTTGGGTTGCGAGCTGCTGTTGCTATACGCCTGCGAAGCATCCATAACAGTACAGATGACTTTGTACTCGAGTTCTTCTTGCCTGTAAATTGTTCTAACAGTGAAGAACAAAAGAAGATGCTCACTTCATTGTCTATGATTATACAAAAGGTTTGCCATAGCCTGCGGGTGATAACAAATAAAGAATTGGAGGAAGAAACCAGCTTATCAATTGATGAAGTGACAATCCCTGCAGAGAGTAGATCTGCTAGGATGGATTTCCAACAATGCAGGAACGTTACTTCACCTGGCACCAAAGAAAAGTCAAATGAGGCTTTGACTAGACAGGTGTCTAACCTGAGTCAGCAAGAAGACTCTATTTTAAAAGGAAACCTTGACTATGGTTGGGAGTGTTCTTCTTTTGGTGAGGGTGGCTTACCGATTGCAGGTTTAAGTAAAACGGGGGACAAAAGACGGACCAAAGCAGAGAAAACAATCACGTTGCAAGTTCTTCGGCAATATTTTGCAGGAAGCCTAAAAGATGCTGCAAAGAATATCGGTGTTTGTACTACAACTTTGAAAAGAATCTGTCGCCAACATGGAATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCAGTTCAAGGTGCCTCTAGCGCTTTTCAGATAGATTCTTTCTACTCAAAGTTTCCGGAGCTAGCATCTCCAAATTTGCCAGGAAGCAGCTTGGTCTCAACTTCAAAGCAAAGTGATCTTCCGAATCCATCAAGCTCAAGGCCTGATACTGGCTTGCAGAGCCCAGAAGCGCCCTCATCTTCATGCAATCAAAGTTCCAGTTCAAGCCATTCCTCTTCCAACATGTCAGAGTTACAGCTTCATGCACAAAATGTTAGAGGGGGAAAAGTTCCTAGGGTTAGAGAAGATTCTGGTGATGGGGCTATGAAGAGGATTCCAAGTGAAGTAAGGCTAAAAAGCTTAAGTCAAGATACAGCAGAGCTCTTGCCAACATCCCAAAGCCAGGAAATACTTTGTGAACCTGCAAAACCTGTGTTGAAAAGCAGTCATAAAGAACATCAAAAAGAAGATACTTACAGAGTAAAAGTCACTCTCAGAGAGGAGAAAACCCGGTTTCGGATGCCAAAGAGTTGGCATTATGAAGATCTTTTGTGGGAAATTGCTTGGCGATTCAACATAGACGACATGCGCAAATTCTATATCAAGTATCTGGACGATGACTCTGACTGGGTTTTGCTAACATGTGATGCTGATTTAGAGGAGTGCATTGATGTGTGTCGACATTCTCAGAGCAGTACCATCAAACTTTGCCTTCTGGATAGTAAATCATAG 2643 0.4332 MIMGDNVVSPGALLDPSIDFDYMDELFSDGCWLETAADGSDFLLRSPSASNPLFDPSFSWPALDTNGHVSLEQRQSPFIDDHQETRNNTRSVGKGKNMIDVADACNPSETRSVESSEVVKKLWIGPMANPSPECSVLERLIKALVYIRDFNRDKDMLLQIWVPVNKEGGRILSTCDLPFSLESSSPNLAKYREISARYHFSAEGYSRGLMPGLPGRVFKEKVPEWTPDVRFFRSDEYPRVDHAQEYDVRGSLALPVFGQHSNVCLGVIEVVMTAQQIKYFPELESVCKALQAVDLRSKNISRIQNVKQACNNSYEAALPEIQEVLRSACEMHKLPLAQTWVACIKQGKEGCRHSDDNYLHCISPVEHACYVGDPCVQAFHEACSEHHLLKGQGVTGEAFLTNQPCFSTDVTSFSKIDYPLSHHARIFGLRAAVAIRLRSIHNSTDDFVLEFFLPVNCSNSEEQKKMLTSLSMIIQKVCHSLRVITNKELEEETSLSIDEVTIPAESRSARMDFQQCRNVTSPGTKEKSNEALTRQVSNLSQQEDSILKGNLDYGWECSSFGEGGLPIAGLSKTGDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLVSTSKQSDLPNPSSSRPDTGLQSPEAPSSSCNQSSSSSHSSSNMSELQLHAQNVRGGKVPRVREDSGDGAMKRIPSEVRLKSLSQDTAELLPTSQSQEILCEPAKPVLKSSHKEHQKEDTYRVKVTLREEKTRFRMPKSWHYEDLLWEIAWRFNIDDMRKFYIKYLDDDSDWVLLTCDADLEECIDVCRHSQSSTIKLCLLDSKS 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2787g00002 880 MobiDBLite consensus disorder prediction 673 725 - -
Pral2787g00002 880 MobiDBLite consensus disorder prediction 673 752 - -
Pral2787g00002 880 CDD PB1_NLP 797 875 IPR034891 -
Pral2787g00002 880 ProSiteProfiles RWP-RK domain profile. 571 652 IPR003035 -
Pral2787g00002 880 SMART PB1_new 795 878 IPR000270 GO:0005515
Pral2787g00002 880 MobiDBLite consensus disorder prediction 732 750 - -
Pral2787g00002 880 Pfam PB1 domain 795 875 IPR000270 GO:0005515
Pral2787g00002 880 SUPERFAMILY CAD & PB1 domains 785 878 - -
Pral2787g00002 880 PANTHER PROTEIN NLP8 73 875 IPR045012 GO:0003700
Pral2787g00002 880 Gene3D - 791 876 - -
Pral2787g00002 880 ProSiteProfiles PB1 domain profile. 795 878 IPR000270 GO:0005515
Pral2787g00002 880 Pfam RWP-RK domain 584 632 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2787g00002 Pral-Chr2787 19019 25144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2787g00002 18 875 NLP Transcription Factor Family AT1G20640 49.307 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pral2787g00002 PB1 1.4e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2787g00002 - - gmx:100790922 1081.24