Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral277g00004 ATGGATTCCACGCATATGGCGCTTTTCAGAGCTCTGAATCGCCATTTCTGCAGAGCGCCTTCTAGTCAATGCATTCCCACTGTTCTTCTCCATCACAGGCTTAAATGCCTTTCTCATAACCATGCTATTCGCAACTCCAGCTCTTTTGCTTCTTCTTCCCACTCGCTCAGGAGCTTGTGTGCGGTTGCCACTCGACTGCCCTATCGTTTCCGGTGTGTTTCGAGCTCTGCTGCTCCGTTTGCTTCTTCTGGCGCTGGAAATGGCAGGCTTGGAGGGGGGAGTGGTGGTGGTGGTGGAGATGGTGGTGCCGGTGGTGGTTCGGGAGACGCCAATCCCAAATTAGTTGGTGATGGTGGTAAAGAACTTTCGGCGCTTTCGCCTGATGTTATCATTCTCGATGTTGCGGGAATGGTGTGCGGGGGATGTGCGGCTAATGTGAAAAGAATTCTAGAAAGTCGACCTCAAGTGTCATCTGCTACTGTAAATCTAACAACAGAGACAGCAATAGTTTGGCCTGTATCTGAAGCAAAAACTGTGCCAAATTGGCAAAAGCAATTAGGAGAGGCGCTAGCAGAGCATTTGACTAGCTGTGGTTTCAAGTCTAGCCTTCGGGATTCAGCAAGAGACAGTTTCCTCCAAGTTTTTGAAAGGAAGATGGAGGAAAAGCACAGACAGTTGAAAGAAAGTGGGCGAGGATTGGCTGTTTCCTGGGCTTTATGTGCTGTCTGCCTTGTTGGCCATCTTTCTCATTTCCTTGGAGCGAAGGCACCTTGGATCCATGCATTTCATTCCACTGGGTTTCACTTATCCCTGTCTTTGTTTACATTGGTTGGTCCTGGGCGTCAACTTATTCTTGATGGCATAAGAAGCCTTCGTAAAAAGGCACCAAACATGAACACATTAGTTGGTCTTGGGGCTTTGTCATCATTTGCTGTCAGCCTATTTGCTACCTTGCTGCCGAAATTGGGCTGGAAGGCTTTCTTTGAGGAACCAATTATGCTAATCGCATTTGTCTTGTTAGGAAGGAATCTGGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACTGGACTTCTTAGTATATTGCCATCAAAGGCTCGCCTTCTGGTTAACAATGACACTAAGGAGTTTGAATCAAGTGTTGAAGTTCCTTCTGACAGTCTTTCTGTTGGAGACCGAATTCTTGTGCTTCCTGGAGATCGTATTCCAGCAGATGGAATTGTTAGAACTGGTAGAAGCACTGTAGATGAGTCAAGTTTTACTGGAGAGCCTCTGCCAGCAACAAAACTACCTGGGAGTCAGGTTGCTGCTGGGAGTATAAATCTAAATGGCATTCTTACAATTGAGGTGCAGAGACCAGGCAGTGAGACTGCCATGGGAGACATTGTTCGTCTGGTTGAAGAAGCACAGAGTCGGGAAGCTCCAGTTCAACATTTGGCTGACAAGGTGGCTGGACACTTCACTTATGGAGTAATGGCAGCTTCTGCAGCCACATTTACATTCTGGAGTCTGTTTGGCACGCGCATTCTTCCTGCTGCTCTTTATCAAGGAAGTGCAGTTTCTCTGGCATTGCAACTTGCTTGCAGTGTTCTGGTTGTTGCTTGTCCGTGTGCACTTGGGTTGGCCACACCGACAGCTGTGCTGGTTGGAACTTCTTTGGGAGCCACGAGAGGATTACTTTTACGGGGCGGAAACATTCTGGAGAAGTTTTCAATGGTAGATGCTGTTGTATTTGACAAAACAGGGACCTTGACAATTGGTAGACCTGTTGTGACAAAGCTTGTTGATACAAGTGGACAAGACATCAACTCAAGGTTGAACAATGAGTGGTCAGAAGTTGAAGTTCTGAGATTAGCTGCTGGAGTAGAATCAAATACAGTACATCCAGTTGGTAAAGCAATTGTAGAAGCTGCTCAGGCAGTTAATTGTCATAATGCAAAGGTAGACGATGGGACATATTTGGAAGAACCTGGGTCTGGTGCAGTAGCAATTATTAATAACAATAAGGTTTCAGTTGGGACTTTGGAATGGCTCATCAGGCAGGGAGTTAACAAAAATATTCATCAAGAAGCTGAGGACTATAGAAATCAGTCTGTTGTTTATGTGGGAGTAAATGATACTGTAGCTGGGCTTATATATTTTGAAGACCAAATAAGGGAAGATGCAAGAGATGTTGTTGAAGCTCTGTCTAAACAAGGAATTGGTGTTTATATGCTCTCGGGAGACAAAAGGAGTACAGCTGAGTACGTTGCATCTGTTGTTGGAATTCCTGGAGAGAAGGTGCTATCTGGAGTGAAGCCAGATGACAAAAAGAAGTTTATAAATGAACTCCAGAAAGATCAAAAAGTTGTTGCTATGGTTGGCGATGGGATCAATGATGCAGCTGCCTTGGCTTCGTCACATATTGGTATTGCATTAGGTGGAGGTGTCGGAGCTGCTAGTGAGGTGTCTTCTATTGTGCTGATGGGCAACAGGCTCTCACAGCTGCTTGATGCATTGGATCTGAGCACGCTCACGATGAAGACTGTGAAACAAAATCTTGGGTGGGCTTTCCTATACAATATTGTTGGAATTCCAATTGCAGCTGGATTGTTACTTCCAGTAAGTGGGACCATGTTGACTCCGTCAATTGCAGGGGCTCTCATGGGCTTGAGTTCCATTGGGGTTATGACAAACTCATTGCTTCTAAGATACAGATTTTCCACGAAGCAAAAACAAATCCATGCGGCATCCCCGATGGTCAAAACCCATGCCGATACTGATCTTGCCCAAAAAGAGAAATTAAAATATGGACAGTAA 2802 0.4536 MDSTHMALFRALNRHFCRAPSSQCIPTVLLHHRLKCLSHNHAIRNSSSFASSSHSLRSLCAVATRLPYRFRCVSSSAAPFASSGAGNGRLGGGSGGGGGDGGAGGGSGDANPKLVGDGGKELSALSPDVIILDVAGMVCGGCAANVKRILESRPQVSSATVNLTTETAIVWPVSEAKTVPNWQKQLGEALAEHLTSCGFKSSLRDSARDSFLQVFERKMEEKHRQLKESGRGLAVSWALCAVCLVGHLSHFLGAKAPWIHAFHSTGFHLSLSLFTLVGPGRQLILDGIRSLRKKAPNMNTLVGLGALSSFAVSLFATLLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSILPSKARLLVNNDTKEFESSVEVPSDSLSVGDRILVLPGDRIPADGIVRTGRSTVDESSFTGEPLPATKLPGSQVAAGSINLNGILTIEVQRPGSETAMGDIVRLVEEAQSREAPVQHLADKVAGHFTYGVMAASAATFTFWSLFGTRILPAALYQGSAVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGATRGLLLRGGNILEKFSMVDAVVFDKTGTLTIGRPVVTKLVDTSGQDINSRLNNEWSEVEVLRLAAGVESNTVHPVGKAIVEAAQAVNCHNAKVDDGTYLEEPGSGAVAIINNNKVSVGTLEWLIRQGVNKNIHQEAEDYRNQSVVYVGVNDTVAGLIYFEDQIREDARDVVEALSKQGIGVYMLSGDKRSTAEYVASVVGIPGEKVLSGVKPDDKKKFINELQKDQKVVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMGNRLSQLLDALDLSTLTMKTVKQNLGWAFLYNIVGIPIAAGLLLPVSGTMLTPSIAGALMGLSSIGVMTNSLLLRYRFSTKQKQIHAASPMVKTHADTDLAQKEKLKYGQ 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral277g00004 933 Pfam haloacid dehalogenase-like hydrolase 574 800 - -
Pral277g00004 933 Gene3D - 129 206 - -
Pral277g00004 933 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Pral277g00004 933 MobiDBLite consensus disorder prediction 91 115 - -
Pral277g00004 933 Pfam Heavy-metal-associated domain 132 200 IPR006121 GO:0046872
Pral277g00004 933 SUPERFAMILY Calcium ATPase, transduction domain A 381 467 IPR008250 -
Pral277g00004 933 ProSiteProfiles Heavy-metal-associated domain profile. 128 202 IPR006121 GO:0046872
Pral277g00004 933 CDD HMA 132 202 IPR006121 GO:0046872
Pral277g00004 933 Gene3D - 348 471 - -
Pral277g00004 933 PANTHER ATP7, ISOFORM B 126 899 - -
Pral277g00004 933 FunFam Copper-transporting ATPase PAA1 chloroplastic 589 719 - -
Pral277g00004 933 FunFam Copper-transporting ATPase PAA1, chloroplastic 128 203 - -
Pral277g00004 933 Gene3D - 569 837 IPR023214 -
Pral277g00004 933 FunFam Copper-transporting ATPase 1, putative 349 471 - -
Pral277g00004 933 SFLD p-type atpase 561 837 IPR044492 -
Pral277g00004 933 PRINTS P-type cation-transporting ATPase superfamily signature 417 431 - -
Pral277g00004 933 PRINTS P-type cation-transporting ATPase superfamily signature 811 823 - -
Pral277g00004 933 PRINTS P-type cation-transporting ATPase superfamily signature 711 722 - -
Pral277g00004 933 PRINTS P-type cation-transporting ATPase superfamily signature 733 743 - -
Pral277g00004 933 PRINTS P-type cation-transporting ATPase superfamily signature 788 807 - -
Pral277g00004 933 PRINTS P-type cation-transporting ATPase superfamily signature 578 592 - -
Pral277g00004 933 NCBIfam heavy metal translocating P-type ATPase 298 897 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pral277g00004 933 NCBIfam copper-translocating P-type ATPase 280 898 - -
Pral277g00004 933 CDD P-type_ATPase_HM 232 896 - -
Pral277g00004 933 Pfam E1-E2 ATPase 362 556 - -
Pral277g00004 933 SFLD C1.7: P-type atpase like 561 837 - -
Pral277g00004 933 NCBIfam HAD-IC family P-type ATPase 623 867 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral277g00004 933 NCBIfam HAD-IC family P-type ATPase 338 599 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral277g00004 933 ProSitePatterns E1-E2 ATPases phosphorylation site. 580 586 IPR018303 -
Pral277g00004 933 SUPERFAMILY HMA, heavy metal-associated domain 130 179 IPR036163 GO:0046872
Pral277g00004 933 FunFam Copper-transporting ATPase PAA1 chloroplastic 704 855 - -
Pral277g00004 933 NCBIfam cadmium family heavy metal-translocating P-type ATPase 330 884 - -
Pral277g00004 933 Gene3D - 589 719 IPR023299 GO:0000166
Pral277g00004 933 SUPERFAMILY HAD-like 577 894 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral277g00004 Pral-Chr277 34428 55395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral277g00004 289 898 Primary Pumps ATPases AT1G63440 37.920 3.85e-117 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral277g00004 K17686 - qsu:112032422 1311.59