Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2771g00016 ATGGGTGACTCATTAGTGTCTAATGACAAATTGGGCGAATCTCCCGCAGTTGAAGTGACGGGAAAAATCATGGTGCTGGCTATAATAATCCTCTTCATGGTGGTGATTTTTGTTCTGTTTCTCCATCTCTACGCCAAATGGTTCTGGTGGAGCATAGAAGAAACCACTCCTCCACCGCCTCGTCGGCGCCGTCGGCGCCGCTTTGTCTTCGCCCCTGGGCAAGATCCGGCGATTTACGGCGGCCAGAGAAGTGGACTCGATCCGTCAGTGCTTTTGTCCTTGCCAGTATTAGTGTACCAACCTGAAAATTTTAAAGATGGTTTGGAATGTGCTGTTTGCCTCTCTGAGCTTGTGGAAGGAGAAAAAGCGAGGCTTTTACCCAAATGCAATCATGGTTTTCATGTGGATTGTATAGATATGTGGTTTCAATCACATTCTACCTGTCCACTTTGTAGAAACCCAGTTGCTTCTGAACCCTCTAAATGCAATAGCAGTTCAAGTGTTCGAGAAAATTCAGCAGAGAATATTGGTAGCCAATCACAAGCAGCGGAAAATTTTCAAAATTCAGCTTTAGCTGCTATGGGTGGTTCTGAGTCTCCAAATTTTCCAACTAATGTGTTGGTTTGGGGGAACCAGACTCAAGTTAGCTCTATTAATACATCTTCGGAAGAAGAGGGTCCTTCCTCTTCTTCCACTACAGCCAGCAGTAGCAGTAACAATAGACGCCATGAAATGATGGTGATTGATATACCGAGTGAGACCAATTCTTCATCTTTGTCTCCTTCTGCCAGCAGGTTTGCTGAAGATGAGCTGAAATCACCAATGACCACAAGACTGAGGTCACTGAAGAGGCTTTTAAGCAGAGACAAAAGGTTAGGTCCTTGTAATCCTGGTCCTGGCTCTATAGATGTGGAACAGGCAGGAAGAGGACAGAGCTAG 939 0.4547 MGDSLVSNDKLGESPAVEVTGKIMVLAIIILFMVVIFVLFLHLYAKWFWWSIEETTPPPPRRRRRRRFVFAPGQDPAIYGGQRSGLDPSVLLSLPVLVYQPENFKDGLECAVCLSELVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVASEPSKCNSSSSVRENSAENIGSQSQAAENFQNSALAAMGGSESPNFPTNVLVWGNQTQVSSINTSSEEEGPSSSSTTASSSSNNRRHEMMVIDIPSETNSSSLSPSASRFAEDELKSPMTTRLRSLKRLLSRDKRLGPCNPGPGSIDVEQAGRGQS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2771g00016 312 MobiDBLite consensus disorder prediction 216 312 - -
Pral2771g00016 312 MobiDBLite consensus disorder prediction 156 181 - -
Pral2771g00016 312 MobiDBLite consensus disorder prediction 250 264 - -
Pral2771g00016 312 SMART ring_2 110 151 IPR001841 -
Pral2771g00016 312 CDD RING-H2_EL5-like 109 152 - -
Pral2771g00016 312 SUPERFAMILY RING/U-box 93 158 - -
Pral2771g00016 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 161 IPR013083 -
Pral2771g00016 312 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Pral2771g00016 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 270 - -
Pral2771g00016 312 FunFam RING-H2 finger protein ATL3 79 157 - -
Pral2771g00016 312 MobiDBLite consensus disorder prediction 216 243 - -
Pral2771g00016 312 Pfam Ring finger domain 109 152 IPR001841 -
Pral2771g00016 312 MobiDBLite consensus disorder prediction 271 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2771g00016 Pral-Chr2771 79334 80953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2771g00016 1 290 C3H Transcription Factor Family AT1G53820 44.051 1.70e-71 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2771g00016 - - qsa:O6P43_027473 341.658