Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2771g00001 ATGCGGGGAGGATCGTCGGGTTCCTCTGCCGGTAATATCTTCGTTGATGAATTCTACTTCTCGGTTCTTTTTGATGAAGATGACATCTTTCCAATCTCCGATGAGAAATATGCAGAACAGATACAGCTGCAAGAGGCGCTGATGTCCTCAGTTATCATGTCCAGGACATTCAGATACGATGAGGATGAGATTAACGTTATTAATGTCGAAGAGTCTTCCGGAAAGGGGAAAATGAAGCCAGAGATTGGTGAATCTTCCGGAAGCTCCAGCATCATGAGCTTCTGTGGGATTTGCATGGAAGACAAAGCAATGGAAAACATGTTCAGAGACAACAAAAGCTGCGAACATGTTTTCTGTTCAGACTGCATGGCATCCTACGTGGCGTCGAAGCTTAAAGAGAACATATCATCAATGGTGAAATGCCCTGACCCAAAATGCAGAAGCATCATAGAGCCGCTCTTCTGTCGATCCATCATCCCAGATGAGTTATTCGAGAGGTGGGAAAATGCAGTGTGCGAGAACCTGATTCTTGGGTCCCAGAAATTTTACTGTCCCTTCAAGGACTGCTCGGCCATGTTGGTGGACGATGGGGACGAGGTGGTGACATCCTCGGAGTGTCCGAACTGCAGGAGGCTGTTCTGTGCTCAGTGCAAGGTGACGTGGCACGCTGGGATGGATTGCACAGAGTTTCAGAGCCAGAAAGCTGATCAGACACACAACGATGATCTTCTAAAGGAACTCGCCAAGAACAAGAGATGGAGGAGATGCCCTCGATGCAGATTTTTCGTGGAAAAGATTGATGGATGCTCTCATATTTCCTGCAGGTGTGGGAATCAGTTTTGTTATGGATGCGGATCTGATTGGAATCAGCATCATGGGTGCCGTTTTTAG 891 0.4714 MRGGSSGSSAGNIFVDEFYFSVLFDEDDIFPISDEKYAEQIQLQEALMSSVIMSRTFRYDEDEINVINVEESSGKGKMKPEIGESSGSSSIMSFCGICMEDKAMENMFRDNKSCEHVFCSDCMASYVASKLKENISSMVKCPDPKCRSIIEPLFCRSIIPDELFERWENAVCENLILGSQKFYCPFKDCSAMLVDDGDEVVTSSECPNCRRLFCAQCKVTWHAGMDCTEFQSQKADQTHNDDLLKELAKNKRWRRCPRCRFFVEKIDGCSHISCRCGNQFCYGCGSDWNQHHGCRF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2771g00001 296 SUPERFAMILY RING/U-box 94 174 - -
Pral2771g00001 296 CDD BRcat_RBR_unk 178 230 - -
Pral2771g00001 296 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 290 IPR031127 GO:0004842|GO:0016567
Pral2771g00001 296 SUPERFAMILY RING/U-box 237 294 - -
Pral2771g00001 296 ProSiteProfiles Zinc finger RING-type profile. 95 145 IPR001841 -
Pral2771g00001 296 SUPERFAMILY RING/U-box 175 232 - -
Pral2771g00001 296 Gene3D - 225 296 - -
Pral2771g00001 296 ProSitePatterns Zinc finger RING-type signature. 114 123 IPR017907 -
Pral2771g00001 296 Pfam IBR domain, a half RING-finger domain 245 294 IPR002867 GO:0008270
Pral2771g00001 296 Pfam IBR domain, a half RING-finger domain 166 227 IPR002867 GO:0008270
Pral2771g00001 296 FunFam RBR-type E3 ubiquitin transferase 90 178 - -
Pral2771g00001 296 ProSiteProfiles TRIAD supradomain profile. 91 296 IPR044066 -
Pral2771g00001 296 SMART ibrneu5 237 294 IPR002867 GO:0008270
Pral2771g00001 296 SMART ibrneu5 165 227 IPR002867 GO:0008270
Pral2771g00001 296 CDD Rcat_RBR_unk 252 288 - -
Pral2771g00001 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 176 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2771g00001 Pral-Chr2771 3078 4068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2771g00001 3 293 C3H Transcription Factor Family AT2G31770 24.601 4.31e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2771g00001 K11975 - qsa:O6P43_018461 393.275