Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2769g00007 ATGCCAGGCTTGGAGGCAGCAGCAGTGGAGGGATTCAGAACCTTGACTGAGACTAAAGCTTGGGACTATGTTGTAGTATGGAAGTATGGCGATGATCCAACAAGATTTATTGAGTGGATGGGCTGCTGTTGTGTTGGGGGATGTAATGGAGGCAAGAACGAAGAGGAAAAGGAGGAAGAACATAGACTGGGTCGTAGATGTAGGGATAGTCACTATCAGCATCCAGATTCAACAGGAACGCAAGTTTTGATCCCTATTATTGGTGGTATTATAGAGCTCTTCTCAGCAGAGACTGTACCAAAAGATTCAAGGATCATAGAGTTGATAACTGCACGTTGCTGTCTCCCTATGAAAAATGAAGCCATTTCTGAACATCCACCGTTAGATTCATGCTACCCACAAAGCTTAATTTCTAGCATACACACATCTGCAGTAGAGCAGTGCATCTCTCACCCAAGCATTGAAGGATCCTCCAGTGGATCATATCCTTCAAATGAAACTCCAAAAGAACATCAAAGAGGTTTGGATTTCCAGTGCGGCACTCTGGAAGAAGATAAACCAGAGTTGGTCAGAAGACCTCAAAGGGAATTCTATACATCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAGCAGGATAAAAGATGGGCTTTATGCTCTACGAGCTTTGGTCCCAAAGATAACCAAGATGGATAGGGCATCCATTGTTGGAGATGCCATTGATTATATAAAGGAACTGCAAGAACAAGAAAAAGGACTTAGACACAAGATCACAGCTTTGGAAGCAGAGGATCATAGAAAGAACAAACCACAGTGGAGGAGGCCAATATTGAAGGAACAAAGAGGAACCAGAAGTTTGCATCTTGATGAGCCCATCCAAAATTCCTCTGATTCCACAAAAAGGACCCAGATGGAGGTGCAGGTTGAAGTGAACCAGATTGGGAAGAGAGAGTTTCTTGTGAAGATACAATGTGAGAAGAAGAGAGGAGGGTTTGCAAGATTGATGGAGACTATCCATTTGTTTGGACTGCAGGTAACTGATGCCAATGTGAACACTTTCGGTGGCGAAGTAGTGAATATTCTGACTGTTAAGGCAAATAAGCTTGATATTCACCCAGACATTTTGAGAGATTATTTAACTAAGCAAGCTGGTTCTCAAGAAAGAGGAGTTGATGTTGAGTTCACGAAGGCTTAA 1194 0.4271 MPGLEAAAVEGFRTLTETKAWDYVVVWKYGDDPTRFIEWMGCCCVGGCNGGKNEEEKEEEHRLGRRCRDSHYQHPDSTGTQVLIPIIGGIIELFSAETVPKDSRIIELITARCCLPMKNEAISEHPPLDSCYPQSLISSIHTSAVEQCISHPSIEGSSSGSYPSNETPKEHQRGLDFQCGTLEEDKPELVRRPQREFYTSKNLVTERNRRSRIKDGLYALRALVPKITKMDRASIVGDAIDYIKELQEQEKGLRHKITALEAEDHRKNKPQWRRPILKEQRGTRSLHLDEPIQNSSDSTKRTQMEVQVEVNQIGKREFLVKIQCEKKRGGFARLMETIHLFGLQVTDANVNTFGGEVVNILTVKANKLDIHPDILRDYLTKQAGSQERGVDVEFTKA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2769g00007 397 MobiDBLite consensus disorder prediction 152 172 - -
Pral2769g00007 397 MobiDBLite consensus disorder prediction 152 168 - -
Pral2769g00007 397 SMART finulus 203 252 IPR011598 GO:0046983
Pral2769g00007 397 MobiDBLite consensus disorder prediction 278 302 - -
Pral2769g00007 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Pral2769g00007 397 MobiDBLite consensus disorder prediction 287 302 - -
Pral2769g00007 397 Pfam Helix-loop-helix DNA-binding domain 205 247 IPR011598 GO:0046983
Pral2769g00007 397 Gene3D - 193 273 IPR036638 GO:0046983
Pral2769g00007 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 262 IPR036638 GO:0046983
Pral2769g00007 397 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 105 373 - -
Pral2769g00007 397 Coils Coil 243 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2769g00007 Pral-Chr2769 58390 60552 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2769g00007 200 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 43.258 5.89e-36 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2769g00007 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2769g00007 - - pcin:129321737 558.91