Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2769g00005 ATGGGCTGCTGTTGTGTTGGGGGATGTAATGGAAGCAAGAACGAAGAGGAAAAGGAGGAAGAATATAGACTGGGTCGTAGATGTAGGGATAGTCACTATCAGCATCCAGTGAGAACCAAGGCTTGTGAGGCCCTTGCTCTGCTTCCTTATACAATGCCACTTTATTCTGGTGTTCATGGAGACGTGGCAATATCAAAACAACCTCAATGGCTTTCCCAGGATTCAACCGGAACGCAAGTTTCGATCCCTATTATTGGTGGTATTATAGAGCTCTTCTCAGCAGAGACTGTACCAAAAGATTCAAGGATCATAGAGTTGATAACTGCATGTTGCTGTCTCTCTATGAAAAATGAAGCCATTTCTGAACATCCACCGTTAGATTCATGCTACCCACAAAGCTTAATTTCTAGCATACACACATCTGCAGTAGAGCAGTGCATCTCTCACCCAAGCATTGAAGGATCCTCCAGTGGATCATATCCTTCAAATGAAACTCCAAAAGAACATCAAAGAGGTTTGGATTTCCAGTGCGGCACTCTAGAAGAAGATAAACCAGAGTTGCTCACAAGACCTCAAAGGGAATTCTATACATCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAGCAGGATAAAAGATGGGCTTTATGCTCTACGAGCTTTGGTCCCAAAGATAACCAAGATGGATAGGGCATCCATTGTTGGAGATGCCATTGATTATATAAAGGAACTGCAAGAACAAGAAAAAGGACTTAGACACAAGATCACGGCTTTGGAAGAAGAGGATTATAGAAAGAACAAACCACAGTGGAGGAGGCCAATATTGAAGGAACAAAGAGGAACCAGAAGTTTGCATCTTGATGAGCCCATCCAAAATTCCTCTGATTCCACAAAAAGGACCCAGATGGAGGTAGAAAAAGAGAGTAATAGAATGAACTCTGCTTCACAATTTTTCAAAGCCATGAATGAAACTACATATTAG 981 0.419 MGCCCVGGCNGSKNEEEKEEEYRLGRRCRDSHYQHPVRTKACEALALLPYTMPLYSGVHGDVAISKQPQWLSQDSTGTQVSIPIIGGIIELFSAETVPKDSRIIELITACCCLSMKNEAISEHPPLDSCYPQSLISSIHTSAVEQCISHPSIEGSSSGSYPSNETPKEHQRGLDFQCGTLEEDKPELLTRPQREFYTSKNLVTERNRRSRIKDGLYALRALVPKITKMDRASIVGDAIDYIKELQEQEKGLRHKITALEEEDYRKNKPQWRRPILKEQRGTRSLHLDEPIQNSSDSTKRTQMEVEKESNRMNSASQFFKAMNETTY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2769g00005 326 MobiDBLite consensus disorder prediction 274 311 - -
Pral2769g00005 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 259 IPR036638 GO:0046983
Pral2769g00005 326 Gene3D - 192 262 IPR036638 GO:0046983
Pral2769g00005 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Pral2769g00005 326 MobiDBLite consensus disorder prediction 151 170 - -
Pral2769g00005 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 103 306 - -
Pral2769g00005 326 Pfam Helix-loop-helix DNA-binding domain 203 245 IPR011598 GO:0046983
Pral2769g00005 326 MobiDBLite consensus disorder prediction 151 166 - -
Pral2769g00005 326 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 30 109 IPR025610 -
Pral2769g00005 326 Coils Coil 241 261 - -
Pral2769g00005 326 SMART finulus 201 250 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2769g00005 Pral-Chr2769 48959 51079 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2769g00005 52 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 31.602 5.36e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2769g00005 bHLH-MYC_N 4.1e-07 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2769g00005 - - pcin:129321737 431.024