LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2756g00007	ATGGCAACTTTTACGACTTCTTCCAAAGTTCGGCAGGAAAAATATGATGTTTTTGTTAGTTTTAGAGGTTCAGACATTAGACGTGGATTTCTTAGCCACTTGAGAAAGCAGCTACGACTAAAGGGGATAGACGTGTACGAGGATGAGAGGTTAGAAAGAGGAGATGAAATATCATCTGCACTTTTGGAAGCAATAGAAAGATCAAGAATTGCGTTAGTGATATTCTCAAAAGACTATGCTTCTTCAAGGTGGTGCTTAGAAGAGCTAGAGAAAATCATGGAATGCAGGAGAGTCAATAATCAGATTGTAATCCCAGTTTTCTATAATGTAGACCCATCACACGTTAGGCATCAAGAAGGATCTTATGCTGATTCATTTGCTCGGCACCAGCAGAAGTTTAAAGACAACTTGTTACAAATTTGGAGATCTGTCTTGAAAGAAGCTGCAAACTTATCTGGTTATGATCATTCCTCAACTTTTCAAAATGAATGTGATCTTATTGATGGACTAATCAAAGATATATCAAAAAAGCTAGAAGGTAAAGACACAATTGAGCCAAAACACCTTATTGGAATTGATGAAAATTTGGCTACTGTTGAATCATTTATGAAAAATGACTCACAAGAAGCTGGAGTTCTTGGAATTTGGGGTAAAGGAGGGATAGGTAAAACAACCTTGGCTCGTGCCACATTTGATAAGTTTTCCCACCAATTTGATAGTTCTTGCTTTGCAGCAAATGTGAGAGAGGAATCGAAAAAGATTGGATTGACTTGTTTACTTGAAAAAATTCTCATTGTTATACTAAACGAAGAAAATCTCACAATGGTTGGAATGCCTAATATTCAAAGGAGGCTACGTCGAACAAGAGTTCTTCTAGTGCTTGATGACGTAGACACCCCCAGTCAATTACAATATCTTATTGAAGAAAATCTCTCATTGGGACCAAGTAGCAAAGTCATCATAACAAGTAGAGACAGGCATGTTCTTATTAGTGGAGGAGTTCATAAAGTACATGAGGTGAAAGAATTAAGCAAGGAAGAATCACTTCAACTTTTCTGTCAGCATGCTTTCAAGCAAGGCCATCCCAAACAAGGATATGAAAAGTTATCAGTGCAGGTAATTGAATATGCAAAAGGTCTTCCTCTGGCATTAAAAGTTTTGGGTTCATATTTGAACTCTAGAAATACAAAAGCATGGGAGAGTGCCCTTAAAAAATTGAGAAAGTATCCAAATAGGGAAATTCAAACTGTATTGAGGGTGAGCTATGATGGACTTGATGCACCAGAAAAGGAAATATTTTTAAATATTGCATTCTTCTTCAGGGGAGAAAAGAAAGAAGATATTATGAGAGTGCTTGATGCTTGTGATGATGACCTCTACATGGACATTGGAATAGATAGGCTTCTAGATACAGCACTCATAACTATTTCAAGTGACAATAGAGTAGAAATTCATGATATGCTACAAGAAATGGCTGAAGAAATAGTTCGTGAGGAATCTAGAGAGCACCCTAAAAGGCGAAGTCGATTAAATGATGTAAAAGAAATTCAAGATATACTAGAAAATAACAAGGGAACTGATATAATTGAAGGCATTGCGTTGAGCATACATGAGTTAAAAAGCGACATACACTGGAGTGCTGACGCTTTTAGAAGAATGAACAAACTGGCTGAAATCCAAATGTATCATAGTAATATTGTAAAACTATCGGAGGGTGTGCAGGATCTTATGAATTTGAAGATAATAAATCTTGCTCATTCGTGGAGGTTAAAGGAGTTGCCTGATTTCTCCATGGCACAAAATCTTGAAATAATGGACCTTAGCCATTGTCACTGTGCCATGTCATTGTTGAAGATTCTATCACTACGAGAAAGCAGCGTTAAGAGTTTGCCAAATAGCATCAAGCATCTTTCAGAGCTCAGAAAAATTGATTTGAGTGGATGCCGGAGGCTTAGGTCCTTACCAGAACTTCCATCTTCCCTTATTTGTTGTTATCTCAGCGATTGCCCATCACTGGAGACCTTCAGTTTCCCACTGATGCGAGCAATACATAACTCTAGTGAGGTTAGAGTCTGTTATCCCGGAAGCACAATCCCAGGGGGCTTCAAATATTCTCAGACCGCTAAGAGTTCCATTAGTATTGAGCTTGCACCAGCTTCTTCTGACCATTTATTGGGTTTCGCTTCTTGTTGTATTTTTTCTGGATTGGTGGTTGGCTCTTGGCCACCAGGTGATAGAAAATTCCACTTTGACGATGAAAAGATCTATTACAAGGGTGAAAATGAACCCAGTTACCTCGGGTATCTGAGTAAAGATCATGTTTGGTTATGGTATGATCCAGTGGATCGCATGTTGAAGGAAAACCAAATAAGGCGATTTGTTGAGGGCGCCACTTGCAAGTTTGCATGTGAATTCTTCTTTAGTTCTATCTTCGGTTCTCATCCGAATGTATATAATCACAGGATAAAAGGGTGCGGAATTTGGCCAATATATGCATCAAAATTACAAGAGAAAATGGAATTAAGGCTGGAGACGGATGCTGTTACAGGCAGTACCCTAATGCTGAAGTGTCCCAACATTAGCCAGCACGTACGTGATTCCGTTAGGAGAAGCACTTGTGTGCGCCAGAGGACAGGGAACTTGACCCGTGATGCC	2655	0.3891	MATFTTSSKVRQEKYDVFVSFRGSDIRRGFLSHLRKQLRLKGIDVYEDERLERGDEISSALLEAIERSRIALVIFSKDYASSRWCLEELEKIMECRRVNNQIVIPVFYNVDPSHVRHQEGSYADSFARHQQKFKDNLLQIWRSVLKEAANLSGYDHSSTFQNECDLIDGLIKDISKKLEGKDTIEPKHLIGIDENLATVESFMKNDSQEAGVLGIWGKGGIGKTTLARATFDKFSHQFDSSCFAANVREESKKIGLTCLLEKILIVILNEENLTMVGMPNIQRRLRRTRVLLVLDDVDTPSQLQYLIEENLSLGPSSKVIITSRDRHVLISGGVHKVHEVKELSKEESLQLFCQHAFKQGHPKQGYEKLSVQVIEYAKGLPLALKVLGSYLNSRNTKAWESALKKLRKYPNREIQTVLRVSYDGLDAPEKEIFLNIAFFFRGEKKEDIMRVLDACDDDLYMDIGIDRLLDTALITISSDNRVEIHDMLQEMAEEIVREESREHPKRRSRLNDVKEIQDILENNKGTDIIEGIALSIHELKSDIHWSADAFRRMNKLAEIQMYHSNIVKLSEGVQDLMNLKIINLAHSWRLKELPDFSMAQNLEIMDLSHCHCAMSLLKILSLRESSVKSLPNSIKHLSELRKIDLSGCRRLRSLPELPSSLICCYLSDCPSLETFSFPLMRAIHNSSEVRVCYPGSTIPGGFKYSQTAKSSISIELAPASSDHLLGFASCCIFSGLVVGSWPPGDRKFHFDDEKIYYKGENEPSYLGYLSKDHVWLWYDPVDRMLKENQIRRFVEGATCKFACEFFFSSIFGSHPNVYNHRIKGCGIWPIYASKLQEKMELRLETDAVTGSTLMLKCPNISQHVRDSVRRSTCVRQRTGNLTRDA	885

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2756g00007	885	Gene3D	-	342	426	IPR042197	-
	Pral2756g00007	885	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	674	IPR044974	GO:0006952
	Pral2756g00007	885	FunFam	Disease resistance protein (TIR-NBS-LRR class)	344	426	-	-
	Pral2756g00007	885	Pfam	NB-ARC domain	200	416	IPR002182	GO:0043531
	Pral2756g00007	885	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	435	IPR027417	-
	Pral2756g00007	885	PRINTS	Disease resistance protein signature	284	298	-	-
	Pral2756g00007	885	PRINTS	Disease resistance protein signature	635	651	-	-
	Pral2756g00007	885	PRINTS	Disease resistance protein signature	212	227	-	-
	Pral2756g00007	885	PRINTS	Disease resistance protein signature	377	391	-	-
	Pral2756g00007	885	Pfam	TIR domain	14	187	IPR000157	GO:0007165
	Pral2756g00007	885	FunFam	Disease resistance protein (TIR-NBS-LRR class)	11	180	-	-
	Pral2756g00007	885	Gene3D	-	12	180	IPR035897	-
	Pral2756g00007	885	Gene3D	Ribonuclease Inhibitor	481	687	IPR032675	-
	Pral2756g00007	885	Pfam	C-JID domain	693	835	IPR045344	-
	Pral2756g00007	885	ProSiteProfiles	TIR domain profile.	13	178	IPR000157	GO:0007165
	Pral2756g00007	885	Gene3D	-	181	337	IPR027417	-
	Pral2756g00007	885	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	154	IPR035897	-
	Pral2756g00007	885	SMART	till_3	14	151	IPR000157	GO:0007165
	Pral2756g00007	885	SUPERFAMILY	L domain-like	484	677	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2756g00007	Pral-Chr2756	128247	131904	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2756g00007	190	661	WRKY Transcription Factor Family	AT5G45050	31.413	3.32e-67	242

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral2756g00007	-		-	pcin:129311144	742.265