Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2752g00011 ATGAACCATAGTGTTCCTGCTTGTAATTCTCAGAGCAATAGCAGTTTCATCAATCAAAAGAATCCCATGGGACCAGATCAAGAACTTGTAGAGCTCCTTTGGCAAAATGGACAGGTAGTTTTGAACAGTCAAACACATAGGAAACCAGTTTTGAATTCAGTACACTCCAGGCAAGTTCAGAATAATGATCAATCAACATTGAGGACTGGTGGATCATACGGGAACTTGAGTAATTTGTTTCAAGAAGATGAGACAGTCTCATGGATCCAATACTCACTGGAAGATCCATTGGAACAAGAATTATGTTCAGACTTTTTACCTGAACTTCCATCCTGTGAGATTGAACCTGGTAAGCCAAATAAGCTGTTTGAAGAAGAGAAGTTTTCCAAATTCACTACCGACAGCGCCTCCCATCTGTCTGCAACTTCACAATCACCTAATATGAAACTGTCCCCTGTTCAGAAATTCTCGGGAAATCCCATCCTTTCTCCTAGATTTTTTCCTGATTCATCTCAGAAAAACGTTGACTTTAATGGGTCACCAAAAGTCCTTAATTTCTCTCAGTTTTCAGCGGTTCCTAAGGTTGTTTCAACATCTTCTAATGCACAACATGGAGAACAAGGTACAGGTAAGATGTTGCAAAATGAGACTGGAGAAGGCTCAGTGATGACAGTTGGTTCAAGTCATTGTGGTAGCAATCAAATTCCTCGAGACAGAGATGTGAGCAGGATTTCAAGCAGTGGTGTTTGGACTACTAGTTTGTCAGCAGAGCCTTTTTCCTTTAGGGATAATGTTCAGAGAACACTTCCAATGGGTGAAAAAGGGAAATCAGAATCACATGAACCAACTGTCACTTCATCTTCTGGGGGCTCAGGCAGTAGTCTTGAAAAAACTTGTTCCCGCTCTACTAGTATCTGTAGCCAGAAAAGAAAAGGGACAGATTCAGAAGAGTTAGAGAAACAAAGTGAGACCACAGAACTCAAATCAGTGGCTAGAAACAAGGAAGCTCAGCGGACAGGGTCTTCCCGAAGGAACCGTGCTGCTGAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGAGGGCATTGCAACAACTCATACCTCACAGTAACAAGACAGACAAAGCATCTATGCTAGATGAGGCAATAGAATATTTGAAATCACTTCAGTTTCAGCTTCAGATGATGTTGATGGGAGCTGGCATGACACCAGTGATGATTCCAGGAATTCAGCACTACATGTCTCAAATGGGTATGGGATTTGCAACACCTTCTGTGTCTAATCATATGAATATACCAAGAGTCCCATTCGATCAATCCATATCTATGTCTCAAGCACCAAATCAGACTGTACCATTCCAAGCTCCTGTTCTGAGTCCCCTTAATTACCAAAATCATATGCAAAATCCAGCTCTTTCTGAGGAATATGCACGCTGCATGGGCTATCATCTTATGCAAAGTGTCTCTCAGCCAATGAATGCATTCAGTTATGGTTCCCAGGCAGTACAACATAGTCAAACCATGATTCCGCCTAGCAATAGCAATGGACCCCTGAGTGGGGCTGCTAATACCAATGATGCTGTCGGTGGCAGGATGGGAATTCCAGTCACCATGTGA 1635 0.4239 MNHSVPACNSQSNSSFINQKNPMGPDQELVELLWQNGQVVLNSQTHRKPVLNSVHSRQVQNNDQSTLRTGGSYGNLSNLFQEDETVSWIQYSLEDPLEQELCSDFLPELPSCEIEPGKPNKLFEEEKFSKFTTDSASHLSATSQSPNMKLSPVQKFSGNPILSPRFFPDSSQKNVDFNGSPKVLNFSQFSAVPKVVSTSSNAQHGEQGTGKMLQNETGEGSVMTVGSSHCGSNQIPRDRDVSRISSSGVWTTSLSAEPFSFRDNVQRTLPMGEKGKSESHEPTVTSSSGGSGSSLEKTCSRSTSICSQKRKGTDSEELEKQSETTELKSVARNKEAQRTGSSRRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSNKTDKASMLDEAIEYLKSLQFQLQMMLMGAGMTPVMIPGIQHYMSQMGMGFATPSVSNHMNIPRVPFDQSISMSQAPNQTVPFQAPVLSPLNYQNHMQNPALSEEYARCMGYHLMQSVSQPMNAFSYGSQAVQHSQTMIPPSNSNGPLSGAANTNDAVGGRMGIPVTM 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2752g00011 544 MobiDBLite consensus disorder prediction 270 360 - -
Pral2752g00011 544 MobiDBLite consensus disorder prediction 281 309 - -
Pral2752g00011 544 MobiDBLite consensus disorder prediction 1 22 - -
Pral2752g00011 544 MobiDBLite consensus disorder prediction 310 360 - -
Pral2752g00011 544 Gene3D - 341 403 IPR036638 GO:0046983
Pral2752g00011 544 SMART finulus 352 401 IPR011598 GO:0046983
Pral2752g00011 544 Pfam Helix-loop-helix DNA-binding domain 350 396 IPR011598 GO:0046983
Pral2752g00011 544 FunFam Basic helix-loop-helix transcription factor 341 404 - -
Pral2752g00011 544 CDD bHLH_AtPIF_like 346 409 IPR047265 -
Pral2752g00011 544 MobiDBLite consensus disorder prediction 221 243 - -
Pral2752g00011 544 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Pral2752g00011 544 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 410 IPR036638 GO:0046983
Pral2752g00011 544 PANTHER TRANSCRIPTION FACTOR PIF3 10 512 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2752g00011 Pral-Chr2752 44250 48155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2752g00011 11 522 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 33.270 2.17e-47 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2752g00011 HLH 2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2752g00011 K16189 - gmx:100784531 650.973