Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2750g00050 ATGTTAGACAATTGGTCATATACTCCAAGTCATTTGCATTTAACTTCCGGGGGCCATGGCTGCAACAATCATATGCCTGAGGAAATCTTGGATTCAAATGGATGGGCTTCATCAAATGTTACAGACTTGAGCAGCCATGCTTATGGTTCATCTAATTTTAGTAATGAACCTGTATTAAGTCTTGCAACATCTCAAACCACAGGCCAGTGCTCAGAGGTGAGTTGTTCTGATGAAATCACCCGTTGCTTCAGTAAAGCAAGGTCAGGATTGGAACATGCCTCTTGCAGCAACAGGGAATCCATGAGTCTGAACTCTGGTAGACACTTCCATTTTTCGCAGGCAATGCTAGGATCAAGATATCTTACTGGAGTTCAAGAGATACTTGCTCAACTTGCAAGCTTTTCACTTGAGAATCTTGAACAGATAAGATATTCACAAGCAAATTCTATGTTCAAATTCCACATGGAAGCTCCATTGGAAAGACATGCAGCTGAATCAAAGAAATCCCAGCTGCTGACACTCTTAGAACTGGTGGACAAGCGATATAATCAGTGTTTGGATGAGATTCATACTGTTGTGTCTGCATTCCATGCTGCTACAGAGTTGGACCCACGCGTTCATGCGCATTTTGCTCTTCAAACGATCTCTTTCTTGTACAAGAACTTGCGAGAGAGGATCAGCAATTACATTCTTGCCATGGGGCGGGATTTTGACAGTTTATGCACACTGGACAAGGAAAGATCTGTTGATACTTCACTCATCCATAAGCAACTGGCTCTCCAACAGTTGAAACGAAAAGATCATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAAAACTCTGTCTCGGTCTTAAGAGCCTGGATGTTTCAGAACTTTCTCCATCCGTATCCTAAAGATTCAGAGAAACATTTACTTGCTTTAAGAACTGGGTTGACGAGAAGCCAGGTATCTAACTGGTTTATAAATGCTCGTGTTCGGCTATGGAAACCCATGATTGAGGAAATGTACGCTGAACTGGATCATAAAAGAAAGGCTAGTCGAAATGAAGGAGGAACAGAGAACAGCCGTGGAAAATCAACTTTGAGATAG 1092 0.4258 MLDNWSYTPSHLHLTSGGHGCNNHMPEEILDSNGWASSNVTDLSSHAYGSSNFSNEPVLSLATSQTTGQCSEVSCSDEITRCFSKARSGLEHASCSNRELXMSLNSGRHFHFSQAMLGSRYLTGVQEILAQLASFSLENLEQIRYSQANSMFKFHMEAPLERHAAESKKSQLLTLLELVDKRYNQCLDEIHTVVSAFHAATELDPRVHAHFALQTISFLYKNLRERISNYILAMGRDFDSLCTLDKERSVDTSLIHKQLALQQLKRKDHQLWRPQRGLPENSVSVLRAWMFQNFLHPYPKDSEKHLLALRTGLTRSQVSNWFINARVRLWKPMIEEMYAELDHKRKASRNEGGTENSRGKSTLR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2750g00050 364 Pfam Homeobox KN domain 289 328 IPR008422 GO:0003677|GO:0006355
Pral2750g00050 364 SMART HOX_1 272 336 IPR001356 GO:0003677
Pral2750g00050 364 MobiDBLite consensus disorder prediction 345 364 - -
Pral2750g00050 364 CDD homeodomain 272 333 IPR001356 GO:0003677
Pral2750g00050 364 SMART prehox3 110 229 IPR006563 -
Pral2750g00050 364 Gene3D - 275 352 - -
Pral2750g00050 364 Pfam Associated with HOX 117 228 IPR006563 -
Pral2750g00050 364 ProSiteProfiles 'Homeobox' domain profile. 269 332 IPR001356 GO:0003677
Pral2750g00050 364 SUPERFAMILY Homeodomain-like 273 341 IPR009057 -
Pral2750g00050 364 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2750g00050 Pral-Chr2750 297509 299057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2750g00050 54 345 Homeobox Transcription Factor Family AT4G32980 54.019 2.20e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral2750g00050 POX 4.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2750g00050 - - pcin:129318985 654.055