Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2750g00031 ATGGAGGGATATAGTAACCAGGTGAGCGAAAGCACAGGTTCAAGGCCTAATTTCTCGTACTCCTTCGCTACAGTTGGAGGCTCAAGTGCGGGAAGCCATCATCAGTCGCCCAGAACTACCTTTCATCTCCAGTCAGGTGGATCTGAGTGTCATCAATCTGTGAAAACCGAAGCCAACACCTCCAATCACTCTCAGATTTTCCACCATCCTTTGATCAGACAAAGCCTCCAGACTCATGGAGGCAGCCAAACTTCTGACGAAGTTGAATCTCTCAAAGCTAAAATCATTGCTCATCCTCACTATTCTAACCTTCTGGAAGCTTACATGAACTGCCACAAGGTAGGAGCTCCGCCGGAAGTGGTGGCACGTCTGACTGCGGCAAGGCAAGAGTTCGAGGCACGACAGCGATCTTCGGTCAGATCCAGGGAAACTTGCAAGGACCCAGAACTTGACCGATTTATGGAAGCTTATTATGACATGCTCGTGAAGTACGGGGAGGAATTAACAAGGCCAATTCAAGAGGCAATGGATTTCATACGCAACATCGAAGCTCAGCTCAATATACTTTCTAATGGACCTGTGCGCATCTTCCCTGAAGACAAGGGCGACGGTGTGGATTCATCTGAAGAGGATCAAGATAACAGCGGCGGAGAAGCAGAAATGGCCGGAATTGATCCTCGAGCTGAAGATCGCGAGCTTAAGAACCACTTGCTAAGAAAGTACAGTGGGTACTTGGGTAGCCTGAAGCAAGAACTTTCAAAGAAAAAGAAGAAAGGAAAGCTGCCTAAAGATGCCAGGCAAAAGCTTCTGAACTGGTGGGAATTACACTACAAATGGCCCTATCCTTCGGAATCAGAGAAAGTGGCACTGGCAGAATCAACGGGGTTGGATCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGCGGCACTGGAAGCCATCAGAAGACATGCAATTTATGGTGATGGAAGGCATGCATCAACAGAATCCCGCTTTCTACATGGACGCCCACTACATGGCCGATGCTCGCTACCGTCTAGGACCATGA 1053 0.4786 MEGYSNQVSESTGSRPNFSYSFATVGGSSAGSHHQSPRTTFHLQSGGSECHQSVKTEANTSNHSQIFHHPLIRQSLQTHGGSQTSDEVESLKAKIIAHPHYSNLLEAYMNCHKVGAPPEVVARLTAARQEFEARQRSSVRSRETCKDPELDRFMEAYYDMLVKYGEELTRPIQEAMDFIRNIEAQLNILSNGPVRIFPEDKGDGVDSSEEDQDNSGGEAEMAGIDPRAEDRELKNHLLRKYSGYLGSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMEGMHQQNPAFYMDAHYMADARYRLGP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2750g00031 350 Pfam KNOX1 domain 91 132 IPR005540 GO:0003677|GO:0005634
Pral2750g00031 350 FunFam Homeobox protein knotted-1-like 2 257 319 - -
Pral2750g00031 350 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677
Pral2750g00031 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 65 322 - -
Pral2750g00031 350 Pfam KNOX2 domain 144 189 IPR005541 GO:0003677|GO:0005634
Pral2750g00031 350 ProSiteProfiles ELK domain profile. 232 252 IPR005539 GO:0003677
Pral2750g00031 350 CDD homeodomain 264 316 IPR001356 GO:0003677
Pral2750g00031 350 SMART KNOX1_2 89 133 IPR005540 GO:0003677|GO:0005634
Pral2750g00031 350 SMART ELK_2 232 253 IPR005539 GO:0003677
Pral2750g00031 350 Pfam ELK domain 232 253 IPR005539 GO:0003677
Pral2750g00031 350 SUPERFAMILY Homeodomain-like 253 325 IPR009057 -
Pral2750g00031 350 MobiDBLite consensus disorder prediction 25 62 - -
Pral2750g00031 350 Gene3D - 257 319 - -
Pral2750g00031 350 SMART KNOX2_2 140 191 IPR005541 GO:0003677|GO:0005634
Pral2750g00031 350 ProSitePatterns 'Homeobox' domain signature. 290 313 IPR017970 GO:0000981|GO:0006355
Pral2750g00031 350 SMART HOX_1 254 319 IPR001356 GO:0003677
Pral2750g00031 350 MobiDBLite consensus disorder prediction 197 229 - -
Pral2750g00031 350 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2750g00031 Pral-Chr2750 211943 215572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2750g00031 53 350 Homeobox Transcription Factor Family AT4G08150 68.197 1.82e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pral2750g00031 KNOX2 9.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2750g00031 - - pcin:129318624 532.717