Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2750g00027 ATGGGGAGAGCTCCTTGCTGCGACAAAGCGAACGTGAAGAGAGGCCCTTGGTCCCCAGAAGAAGATGCGAAGCTCAAGTCCTATATTGAACAACACGGCACCGGCGGTAACTGGATCGCTTTGCCACAAAAGATCGGGCTAAAGAGATGCGGCAAGAGTTGCCGTCTACGGTGGTTGAACTACCTTCGCCCCAATATCAAGCACGGGGGTTTCTCCGAAGAAGAGGACAACATCATATGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTGATTGCTGCTCAATTGCCGGGACGAACAGATAACGATATAAAGAACTACTGGAACACAAGGTTGAAGAAGAAGCTTCTGGGAAAGCACCGCAAAGAACAACAGGCTCGTTGTAGGGGCAAGAATAAGCAGGGAGCGAATAAGAGTACTGTTGGGAATTCATCGATCCTTGGAGAAAACAGTAGTGTTCAGGTTCAGGCTCAACAACAACCGTATTGGCCTCACCCCCAGATGATGCCAGTGCTGCCACCCTTGCCTTACTCAGACCAAGTCCCAGGTTTCAACGACCAAGATTCCATTAGAAAACTGCTTATCAAGCTTGGAGGAGTGTTTTCTGACCAGCCTGATGGGTTCAATTTTCATTTACCAGATGCCACTCATCCCTCCGCACAATCACCAATTTATCAAGTTTCTTCTTCTGCTTCCGCAGGCGCTATGAACAATAACCAACTTCAATTCCCTCATCTCCATTACCACTCTGGACTTAATAACTTGGTGCAAGGAAGCAGCACTTTCACCCAAGCACAGGAGGAAATAATGTCCGTATCTTATCCCCCTAGCCTAGATGGGCTGGAATTCTTGATCAATCATGATGATAAGATAGACCCTACCGCCTCGTGTCACAGCAACACCATAGTTAGTCCTCCTCTACTTTCCTCCGATTACGAATGTATCCCACCAACTGATCAGCAATTTGCTTTTCAGGAGTTGAGGTATCCAGGTGCCCACTAG 1005 0.4816 MGRAPCCDKANVKRGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQARCRGKNKQGANKSTVGNSSILGENSSVQVQAQQQPYWPHPQMMPVLPPLPYSDQVPGFNDQDSIRKLLIKLGGVFSDQPDGFNFHLPDATHPSAQSPIYQVSSSASAGAMNNNQLQFPHLHYHSGLNNLVQGSSTFTQAQEEIMSVSYPPSLDGLEFLINHDDKIDPTASCHSNTIVSPPLLSSDYECIPPTDQQFAFQELRYPGAH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2750g00027 334 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pral2750g00027 334 CDD SANT 71 113 IPR001005 -
Pral2750g00027 334 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pral2750g00027 334 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pral2750g00027 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pral2750g00027 334 MobiDBLite consensus disorder prediction 131 146 - -
Pral2750g00027 334 FunFam Transcription factor RAX3 7 68 - -
Pral2750g00027 334 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pral2750g00027 334 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pral2750g00027 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pral2750g00027 334 SMART sant 13 64 IPR001005 -
Pral2750g00027 334 SMART sant 67 115 IPR001005 -
Pral2750g00027 334 CDD SANT 16 62 IPR001005 -
Pral2750g00027 334 MobiDBLite consensus disorder prediction 120 146 - -
Pral2750g00027 334 Gene3D - 70 142 - -
Pral2750g00027 334 Gene3D - 7 68 - -
Pral2750g00027 334 PANTHER OS09G0431300 PROTEIN 1 269 - -
Pral2750g00027 334 FunFam Transcription factor RAX3 70 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2750g00027 Pral-Chr2750 192373 193937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2750g00027 1 205 MYB Transcription Factor Family AT3G49690 64.390 1.68e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral2750g00027 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2750g00027 K09422 - gmx:100800290 357.066