Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2750g00018 ATGCCTCTGCATCGGTCGTCTTCAGGTGGTGGCGCCGAGGTGCTCGATCTAGAAACTGCTGTCAAAGGCGGGGTTTTGGACGGCAAAGCTGCGCTGCCTGGTGGTGGCTGCGGCGATGGTGATAAAATAGATCTGAAGGTGTTGATTGAAGAGCTTGACTCAGTTGATGTGCCGTCGGTGTTCATCTGTCCAATCTCGTTGGAGCCTATGCGAGAGCCTGTGACTCTTTGCACGGGTCAGACCTACGACAGATCCAACATTCTCAAATGGTTCGCTCTGGGTCATAATACCTGCCCCACGACGATGCAGGAGCTCTGGGACGATTCAGTGACGCTGAACAGGACTCTCAGCCAATTAATCCATAGTTGGTTCTCGCAGAAGTACCTCTCATTGAGGAAGCAGTTCCAGGATGTGCAAGGAGGAGCTCTGGAGCTCTTAGGGACACTCAAGAAGGTGAAGGGTCAAGCCAGAGTTCATGCTCTTCGGGATCTTAGGCAGCTTGTCACCGCCCATGCGTCCACAAGGAAGAGAGTCGTGGAAAATGGTGGGCTGTCTTTAATTTCTTCTTTACTGGGTCCTTTCACTTCCCACGCAGTTGGGTCGGAAGCAATAGGAATTCTAGTGAACCTGGATTTGAATTCAGAGTCGAAGAGAAATCTGATGCATCCAGCCAAGATATCTTTGTTGGTCGATGTTATGAACGAAGGAACGATTGAGACAAAGATGAACTGTGCAAAATTGATTGAAGCATTGTTGATGGAAGTGAATGAGTCGGAGACGGAGATTTTGTCAAGCCTGAGTCTTTTGGTCGGATTACTGAGGTTAGTGAGGGATAAGAAACACCCAACTGGGGTCTTAACTGGACTCATGTTACTGAAGACAATCTGTTCCCACGAATCAGTCAGAAGCTCCATGGTAAGCCTAGGAGCAGTGGCTCAGTTGATTGAGCTTCTTCCAAGTTTAAGCCACGAATGCCTAGAGATAGCCCTGTACATTCTAGAGGTATTGTCAACTCTTCCAGAGGGAAGACTGGCATTGAAAGAGTGCCCGAACATCATACCCAATGTGGTGAAGTTAATGATGAGAGTATCAGAGAGCAGCACTCAATTCGCTTTGTCAATATTGTGGGCTATCTACAAGCTTGCCCCTGAAGAATGTGCATCACAGGCGGTGGAGGCAGGTTTGGCACCCAAGCTTCTGCTTGTGATTCAGAGTGGTTGCAACCCAGTGTTGAAGCAGATGTCTACCGAGTTCTTGAAAATGTGCAGTCTCAATTACTCCACTAGCCTCTTGATTTCTAAATGTATGCTCACCAGAACAATACGATGA 1329 0.4816 MPLHRSSSGGGAEVLDLETAVKGGVLDGKAALPGGGCGDGDKIDLKVLIEELDSVDVPSVFICPISLEPMREPVTLCTGQTYDRSNILKWFALGHNTCPTTMQELWDDSVTLNRTLSQLIHSWFSQKYLSLRKQFQDVQGGALELLGTLKKVKGQARVHALRDLRQLVTAHASTRKRVVENGGLSLISSLLGPFTSHAVGSEAIGILVNLDLNSESKRNLMHPAKISLLVDVMNEGTIETKMNCAKLIEALLMEVNESETEILSSLSLLVGLLRLVRDKKHPTGVLTGLMLLKTICSHESVRSSMVSLGAVAQLIELLPSLSHECLEIALYILEVLSTLPEGRLALKECPNIIPNVVKLMMRVSESSTQFALSILWAIYKLAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSTEFLKMCSLNYSTSLLISKCMLTRTIR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2750g00018 442 CDD RING-Ubox_PUB 58 110 IPR045210 -
Pral2750g00018 442 Gene3D - 133 431 IPR011989 -
Pral2750g00018 442 SUPERFAMILY ARM repeat 226 425 IPR016024 -
Pral2750g00018 442 Pfam U-box domain 57 127 IPR003613 GO:0004842|GO:0016567
Pral2750g00018 442 PANTHER WDSAM1 PROTEIN 53 429 IPR045185 GO:0061630
Pral2750g00018 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 132 IPR013083 -
Pral2750g00018 442 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Pral2750g00018 442 SUPERFAMILY RING/U-box 51 127 - -
Pral2750g00018 442 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2750g00018 Pral-Chr2750 106672 108580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2750g00018 2 442 U-box Gene Family AT3G49810 62.108 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2750g00018 - - mof:131162315 623.624