Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2750g00003 ATGGGAACAGAGAGTCCGGCCAATTACACTTACTTGGGACGGAGTCTCAGCGAATTGAGTATCAACGATAATTCTTCCTCTGCTTTCAGCGACTGTAACAGTGATAGATCTGGTGAATTCCCCACTGCTTCTTCCCAGAGCCGCCGTCTTCTTATCGCCTGCGCTTCTGAGAATTCCGATGATTTTATTCGCCAGCTCGTCTCCGATCTCCATTCCACTTCTATTGACGAGCAAAAGCAGGCCGCCCTGGAGATCAGATTACTAGCCAAGAATAAACAAGAAAATCGCCTCAAAATCGCCGAAGCTGGAGCAATTAGGCCCTTAATCTCGCTTATATCTTCCCCCGACCTTCAGCTCCAAGAGTATGGCGTCACCGCGATTCTGAATCTTTCGTTATGCGACGAGAACAAAGACCTTATAGCTTCATCGGGAGCGATCAAACCTCTGGTTCGAGCTCTCAAGACAGGAACACCTGCGGCTAGAGAGAACGCGGCGTGCGCTCTGCTTCGTCTGTCGCAAGTGGAGGAGAATAAGATCGTAATTGGAAGGTCGGGAGCTATTCCAGCTCTGGTGAGTCTTTTAGAGAACGGGGGGTTCAGAGGGAAGAAAGACGCATCGACGGCGCTGTATTCGCTGTGTTCGGTGAAGGAGAACAAGATAAGAGCAGTACAAGCAGGAATCATGAGGGCGCTAGTGGAATTGATGGCGGATTTCGGATCAAACATGGTGGACAAGTCAGCGTACGTGTTGAGCGTGCTGGTATCGGTGCCGAAGGCGAGGACAGCATTAGTGGAAGAAGGAGGGATTCCGGTGCTGGTGGAAATAATAGAGGTGGGTTCACAGAGGCAAAAGGAAATCGCAGTGGTGATACTGTTGCAGATTTGCGAGGACAGCGTGGCTTATCGTACAATGGTTGCCCGCGAAGGAGCCATTCCTCCGTTGGTCGCATTGTCCCAATCCGGCACCAATCGGGCCAAACAGAAGGCGGAGACACTCATAGAGCTTCTACGGCAACCGAGATCCGGCAACGTCGCTGCTCGAACCTCGGAAGTGTCGGCATAA 1062 0.5151 MGTESPANYTYLGRSLSELSINDNSSSAFSDCNSDRSGEFPTASSQSRRLLIACASENSDDFIRQLVSDLHSTSIDEQKQAALEIRLLAKNKQENRLKIAEAGAIRPLISLISSPDLQLQEYGVTAILNLSLCDENKDLIASSGAIKPLVRALKTGTPAARENAACALLRLSQVEENKIVIGRSGAIPALVSLLENGGFRGKKDASTALYSLCSVKENKIRAVQAGIMRALVELMADFGSNMVDKSAYVLSVLVSVPKARTALVEEGGIPVLVEIIEVGSQRQKEIAVVILLQICEDSVAYRTMVAREGAIPPLVALSQSGTNRAKQKAETLIELLRQPRSGNVAARTSEVSA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2750g00003 353 Gene3D - 202 351 IPR011989 -
Pral2750g00003 353 FunFam U-box domain-containing protein 4 47 352 - -
Pral2750g00003 353 SUPERFAMILY ARM repeat 59 336 IPR016024 -
Pral2750g00003 353 Gene3D - 19 198 IPR011989 -
Pral2750g00003 353 PANTHER U BOX DOMAIN-CONTAINING 62 337 - -
Pral2750g00003 353 SMART arm_5 174 214 IPR000225 GO:0005515
Pral2750g00003 353 SMART arm_5 215 255 IPR000225 GO:0005515
Pral2750g00003 353 SMART arm_5 256 296 IPR000225 GO:0005515
Pral2750g00003 353 SMART arm_5 92 132 IPR000225 GO:0005515
Pral2750g00003 353 SMART arm_5 298 338 IPR000225 GO:0005515
Pral2750g00003 353 SMART arm_5 133 173 IPR000225 GO:0005515
Pral2750g00003 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Pral2750g00003 353 Pfam Armadillo/beta-catenin-like repeat 176 214 IPR000225 GO:0005515
Pral2750g00003 353 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515
Pral2750g00003 353 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2750g00003 Pral-Chr2750 13117 15133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2750g00003 44 345 U-box Gene Family AT2G23140 49.338 3.95e-88 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2750g00003 - - cpap:110811338 575.474