Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2746g00003 ATGCTTCCTCCTATTACCTGCATTCTGTTCTTATGTGTCTTGAGTTCCTTCTCTCCTTCCATTAGAGCTTCCTTCAACCTCACCTTGCCCCACCAGCATCCTTACCCTGAAGCTGTGGTTCATGAAGTTCACAGGAGAGTCAATGCATCTCTTTCCCGGAGGCAACTACTCGACGGCTCCGGAAAGGACCTCAGTAGTAGCTGTCTCACCGGCAATCCAGTAGACGACTGTTGGCGATGCGACCCTGACTGGGCGGCAAACCGGCAGAAGCTCGCGGACTGCGGCATTGGATTCGGCCGCGACGCCATGGGTGGAAAAGGCGGCCGGATCTACGTCGTCACTGACTCATCCGACCACGACCCGGCGAACCCAACTCCGGGGACACTTCGTTTCGGAGTGATCCAAGAAGAGCCCCTCTGGATCATCTTTTCCGGCAGCATGATCATCACTCTAAAACACGAGCTCATCTTCAACAGCTTCAAAACCATCGACGGCCGCGGCGCCAACGTCCACATAACTGGCCACGGCTGCCTGACGCTCCAGTACGTTTCCAACATCATCATCCACAACGTCCACATCCACCACTGCAAACCCTCAGGAAACACCAACATCCGGTCAAGCCCAACACACGTCGGTTACAGAGGGAAATCGGACGGCGACGGAATCTCAATATTCTCGTCCCGGAAGATCTGGATCGACCACTGCTCGCTGTCATACTGCACAGACGGACTAGTGGACGCGATAATGGGGTCGACGGGGATAACGATATCGAACAACCACTTTGGGCACCACGACGAAGTGATGCTTCTGGGGCACGACGATAAGTTCTTGCCGGACACGGGGATGCAGGTGACGATAGCGTTTAACCATTTCGGAGAAGGATTGGTTCAGAGAATGCCGAGATGTAGACTGGGTTATATTCATGTGGTGAACAACGATTTCACGCAGTGGGAGATGTATGCCATCGGCGGCAGCGCTAACCCCACCATCAACAGCCAGGGTAATCGTTATACTGCGCCGCCCAGTCCCGATGCTAAAGAGGTGACGAAGCGTGTGGACACAGACGAGGGAGATTGGGCGGACTGGAACTGGCGGACGGAGGGAGACATTATGGTCAACGGCGCCTTCTTCGTGCCGTCCGGCGGTGGTTTCAGCGCTCAGTACGCCAAAGCCTCCAGCGTCGATCCCAAGTCCGCCGTCCAGATCGACCAGCTCACCCTCAACGCCGGCGTCTTTGGCGATCCCAGGGATAATGGGGATCTGTTTCCCGGGTTCAGCGGCAGTGGGGCCGTCGGCGGCGCCACCAGCACCGGCAACGTGGGTTCCAGCAGCGGCGACGATGGGGACTTCTGAATGATATTCAAGGGTAGTAGCAGCGAAGCAGCACCACCCTCACTCTCCATTGTTTCAATCTTTTTGTCTATTCTCATTTTCCATTTTGTACACTTTCACAGCCATGCCGTCCTATTGTCGTCCATACTATGA 1485 0.5542 MLPPITCILFLCVLSSFSPSIRASFNLTLPHQHPYPEAVVHEVHRRVNASLSRRQLLDGSGKDLSSSCLTGNPVDDCWRCDPDWAANRQKLADCGIGFGRDAMGGKGGRIYVVTDSSDHDPANPTPGTLRFGVIQEEPLWIIFSGSMIITLKHELIFNSFKTIDGRGANVHITGHGCLTLQYVSNIIIHNVHIHHCKPSGNTNIRSSPTHVGYRGKSDGDGISIFSSRKIWIDHCSLSYCTDGLVDAIMGSTGITISNNHFGHHDEVMLLGHDDKFLPDTGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPPSPDAKEVTKRVDTDEGDWADWNWRTEGDIMVNGAFFVPSGGGFSAQYAKASSVDPKSAVQIDQLTLNAGVFGDPRDNGDLFPGFSGSGAVGGATSTGNVGSSSGDDGDFFXMIFKGSSSEAAPPSLSIVSIFLSILIFHFVHFHSHAVLLSSIL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2746g00003 495 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Pral2746g00003 495 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Pral2746g00003 495 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Pral2746g00003 495 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Pral2746g00003 495 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Pral2746g00003 495 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Pral2746g00003 495 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Pral2746g00003 495 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Pral2746g00003 495 Pfam Pectate lyase 154 335 IPR002022 -
Pral2746g00003 495 PANTHER PECTATE LYASE 18-RELATED 31 412 IPR045032 GO:0030570
Pral2746g00003 495 Gene3D - 71 413 IPR012334 -
Pral2746g00003 495 SUPERFAMILY Pectin lyase-like 66 392 IPR011050 -
Pral2746g00003 495 SMART amb_all 146 343 IPR002022 -
Pral2746g00003 495 FunFam Pectate lyase 71 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2746g00003 Pral-Chr2746 49372 55069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2746g00003 25 418 Polysaccharide Lyase AT3G54920 70.896 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2746g00003 K01728 - gmx:100808438 768.844