Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2738g00006 ATGGCTGCTTCCAGTCGTACGAACCTGCCGGACCACTTCAAGTGTCCGATTTCGCTCGAGATAATGTCTGACCCGGTTATCCTCTCCTCCGGTCACACCTTCGATCGGTCTTCAATCCAACGGTGGCTCGACGCTGGCCACCGGACTTGTCCAATTACGAAATTACCCCTCCCTGATTGTCCTTCCCTCATACCCAATCACGCTCTCAGAAGCTTGATTTCAAACTATTATCATATCTCACCATTCAAGCAGCAGCCTCCTCAACCGGAAACCTTAATTTCCGCCATTACCTCTCGCTCGTCGCCATTGGAGAGCAAAATTGAATCACTTGACCAACTTACGCGCCTGTCCAAGCGTGACTCGGTTTTCCGTCGCCGGATGACTGAGTCAGGAGTCGTGTCGGCGGTGCTGAACTGTGTTGACTCTGGTGAACCTTGTGTACAGGAGAAAGCGCTTTTGTTGTTACTCAATCTTAGTCTCGACGACGATAACAAGGTGGGTTTGGTGGCGGAGGGTGCGATAGGGAAGGTTGTGGCTGTTCTGTTAGGTGGCTCACCTGATTGCCGAGCGGTGGCAGCAACCATGTTGACGAGTTTGGCGGTTGTGGAGGTGAACAAAGCCACAATTGGTGCGTATCCATATGCTATAGGAGCTCTTGCTTCTCTTCTTCGAGATGGTGAAGGCAAGGAGAAGAAAGAAGCGGCTACAGCGCTCTATACTATATGTTCTTTTCCGGATAATCGGAGGAGAGCCGTAGAATGTGGGGCAGTCCCGATTTTGCTGAGAAGTCTTGATTCTGGCCTTGAAAGGGCTGTTGAAGTTCTTGGTCTGTTGGCGAAGTGCAGGGAATGTAGAGAACAAATGGAAAGGTATAATGGATGCATACAGATTTTAGTACGGGTGCTGAGGAATGGAAGCTCGAGGGGAATTCAATATGCCCTGTTAGCACTGAATTCCATTTGCTGTAACAGTGAAAAAATGGTCCTGGAGGCGACTAAAGAAGGAATTTTGGATACTTGTCTGGGATTGCTGGAGGATGATAATGAAAAGATAAGGAGAAATTCATCCAGTTTGATTAAGGTTCTGCGTGGCAACCATCGGGTTAGTTGA 1110 0.4883 MAASSRTNLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDCPSLIPNHALRSLISNYYHISPFKQQPPQPETLISAITSRSSPLESKIESLDQLTRLSKRDSVFRRRMTESGVVSAVLNCVDSGEPCVQEKALLLLLNLSLDDDNKVGLVAEGAIGKVVAVLLGGSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIGALASLLRDGEGKEKKEAATALYTICSFPDNRRRAVECGAVPILLRSLDSGLERAVEVLGLLAKCRECREQMERYNGCIQILVRVLRNGSSRGIQYALLALNSICCNSEKMVLEATKEGILDTCLGLLEDDNEKIRRNSSSLIKVLRGNHRVS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2738g00006 369 PANTHER U BOX DOMAIN-CONTAINING 6 358 - -
Pral2738g00006 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 78 IPR013083 -
Pral2738g00006 369 CDD RING-Ubox_PUB 10 59 IPR045210 -
Pral2738g00006 369 SUPERFAMILY RING/U-box 6 78 - -
Pral2738g00006 369 Gene3D - 90 269 IPR011989 -
Pral2738g00006 369 SMART Ubox_2 12 76 IPR003613 GO:0004842|GO:0016567
Pral2738g00006 369 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Pral2738g00006 369 Gene3D - 270 362 IPR011989 -
Pral2738g00006 369 FunFam RING-type E3 ubiquitin transferase 8 80 - -
Pral2738g00006 369 SUPERFAMILY ARM repeat 91 362 IPR016024 -
Pral2738g00006 369 ProSiteProfiles U-box domain profile. 8 83 IPR003613 GO:0004842|GO:0016567
Pral2738g00006 369 SMART arm_5 244 280 IPR000225 GO:0005515
Pral2738g00006 369 SMART arm_5 120 160 IPR000225 GO:0005515
Pral2738g00006 369 SMART arm_5 161 201 IPR000225 GO:0005515
Pral2738g00006 369 SMART arm_5 281 322 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2738g00006 Pral-Chr2738 107087 108731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2738g00006 8 364 U-box Gene Family AT4G21350 61.749 5.02e-155 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2738g00006 - - pcin:129286672 642.499