Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2731g00001 ATGAGTCAAAGTTCAAGGTTACAGTCTATGGGGAAAACATGCTGTGTGAAGCAGTTCATTAATGGAGCTAGAGAGAGGTGTTCTGAACCAGTGAATGGTAAAGAAGATCGGAGAAAAGTAGAAGGAAGAAAAAGGAAGCAGGTTGATAATGAAGGTTTCATAGAAGCAAAATGCATTAAGAGTGAATTTGATTCAACTGAAGCAATTAATATCGATTCTGATTCTTCTGATGATGATGATGAAGAAATGCAAATCCCACCAGCTTTTATCAAGGAGTTTGGAAAGGAAGAGGTGCCAAAGAAAACAACACTTGAGACTTATAATGGCAAATTTTGGGAAGTTGGAGTGGAAAAGCTCGGAAGAAAATTTTACTTTGATAATGGCTGGGATAACTTTGTGAGAGTTAATAGTCTGGAAAATGGGGATTTCTTGCTGTTTAAGTATTTTGCAGATTATTCAAAGTTTAACGTCAAAATATATGGAAAAACTTGCTGTGAGAAGCAATTGAACGTTGTTGGGGAAAGATGTACCCAGAAAAGAAAAGCACAAACTGTTGAGGTCAAAAGGAATGAAAAGTATGGCGGCAGAATGCCTCCAGATTATCATAACCATATCGAATTCGAATCTGAGAATCCGTTCTTTCAGCACAAACTCATGCCTACAACTGCCAACCAGTATCTGTATATACCCAAAGGTTTTTTCAAGGAACGTATGAAGGAAAGCAAAAGGATAAAGTTAGAGTTATCAGAAAGAACATGGAATATGGAGATTTATGTGCACGAACGTGAACGTGATGCAAAACGAACAAAGGACGCCAGAGTGGTTAAGGGATGGAAGAGATTGGTGAATGAACATCATTTGGAAATTGGAGACGTCTGCTTCTTTGAAATGATTGCAAGTTATTATGATTCTGATTGTTCTGAGTTTCTTGTCCATGTTTATAGTGATCTGCATCTTCTCGCCAAAGCTTCCATGGACAGAGCTTCACAATGGCAAAGAAAACGCAAGAAACCTTCCTTCTTCAAGATTCTGATCCAAGATTTCTCTACCCGCCTGCAAATCCCGCCAGCTTTCTACAAGGTGTTTGGTAAAGAGGTGCCAAAGAAAGCAATTCTTGAGACTTGTTATGTTTCTGAAGATGAAACAATTAATATTGATTCTGATTCTTCTCAGCATCCTATCGTCGAAGAAGAAGTTGGTAATTCGAAGCAGCCAACGAGTGAAGAAGCCACAAGATTGCCCACTGATAACCAAACAGAATCTGAGAGTTCTTCCTTCCAAGTCAAACTCAGATCCTCAAGTATCAATAGCTATCTGGAAAACGAAAGGCAGGAGATTAGAATAGAGATGACCAACAAAGTATGGGAAGTGGGTGTTCTAGTGTTTTGGGCAGACGGTAAGAAGGAAGCACTGACAGGAGCAAGGCTGACCCAAGGATGGAGGAACCTGGTCTCAGAATGTCGTCTCCAAATGGGAGATGTCTGCAATTTTGAATTGATCCAACCAACAGCTCATCATCAGCAACTTGTCTTTCGTCTTCGTGTTCTTCGATGGGATCCTCAAAACGACAAGTTTACTCAGATACTTTAG 1590 0.3975 MSQSSRLQSMGKTCCVKQFINGARERCSEPVNGKEDRRKVEGRKRKQVDNEGFIEAKCIKSEFDSTEAINIDSDSSDDDDEEMQIPPAFIKEFGKEEVPKKTTLETYNGKFWEVGVEKLGRKFYFDNGWDNFVRVNSLENGDFLLFKYFADYSKFNVKIYGKTCCEKQLNVVGERCTQKRKAQTVEVKRNEKYGGRMPPDYHNHIEFESENPFFQHKLMPTTANQYLYIPKGFFKERMKESKRIKLELSERTWNMEIYVHERERDAKRTKDARVVKGWKRLVNEHHLEIGDVCFFEMIASYYDSDCSEFLVHVYSDLHLLAKASMDRASQWQRKRKKPSFFKILIQDFSTRLQIPPAFYKVFGKEVPKKAILETCYVSEDETINIDSDSSQHPIVEEEVGNSKQPTSEEATRLPTDNQTESESSSFQVKLRSSSINSYLENERQEIRIEMTNKVWEVGVLVFWADGKKEALTGARLTQGWRNLVSECRLQMGDVCNFELIQPTAHHQQLVFRLRVLRWDPQNDKFTQIL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2731g00001 529 Gene3D - 400 518 IPR015300 -
Pral2731g00001 529 Gene3D - 201 316 IPR015300 -
Pral2731g00001 529 Pfam B3 DNA binding domain 76 160 IPR003340 GO:0003677
Pral2731g00001 529 Pfam B3 DNA binding domain 221 313 IPR003340 GO:0003677
Pral2731g00001 529 CDD B3_DNA 212 315 IPR003340 GO:0003677
Pral2731g00001 529 MobiDBLite consensus disorder prediction 26 47 - -
Pral2731g00001 529 SUPERFAMILY DNA-binding pseudobarrel domain 81 169 IPR015300 -
Pral2731g00001 529 PANTHER B3 DOMAIN-CONTAINING 401 500 - -
Pral2731g00001 529 SMART B3_2 66 163 IPR003340 GO:0003677
Pral2731g00001 529 SMART B3_2 214 317 IPR003340 GO:0003677
Pral2731g00001 529 SMART B3_2 340 517 IPR003340 GO:0003677
Pral2731g00001 529 ProSiteProfiles B3 DNA-binding domain profile. 212 317 IPR003340 GO:0003677
Pral2731g00001 529 SUPERFAMILY DNA-binding pseudobarrel domain 207 314 IPR015300 -
Pral2731g00001 529 ProSiteProfiles B3 DNA-binding domain profile. 68 163 IPR003340 GO:0003677
Pral2731g00001 529 SUPERFAMILY DNA-binding pseudobarrel domain 422 514 IPR015300 -
Pral2731g00001 529 Gene3D - 71 165 IPR015300 -
Pral2731g00001 529 CDD B3_DNA 83 160 IPR003340 GO:0003677
Pral2731g00001 529 CDD B3_DNA 439 512 IPR003340 GO:0003677
Pral2731g00001 529 MobiDBLite consensus disorder prediction 28 47 - -
Pral2731g00001 529 MobiDBLite consensus disorder prediction 397 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2731g00001 Pral-Chr2731 1623 19200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2731g00001 80 166 B3 DNA Binding Superfamily AT4G01580 35.632 1.07e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral2731g00001 B3 2.5e-10 CL0405