Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2730g00009 ATGCTTCTTCTCTGCCTTAAAAGCATATCAAGAAAGGAAGTTCATTATGGAATATATGCCACAATGGAACAGGTAAATGCTGCTGGCGACCTATGTGCTATATGCCAAGAGAAGATGCATGCTCCAGTTTTGTTGCGTTGCAAACACATCTTCTGTGAGGAATGCGTATCAGAATGGTTTGAGAGAGAACGGACTTGCCCGCTATGCAGAGCATTGGTAAAACCCGCTGAACTACGGACCTTTGGAGATGGATCGACAAGTCTAATTTTCCAGCTGTTTTAG 282 0.4362 MLLLCLKSISRKEVHYGIYATMEQVNAAGDLCAICQEKMHAPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPAELRTFGDGSTSLIFQLF 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2730g00009 93 Pfam Zinc finger, C3HC4 type (RING finger) 30 73 - -
Pral2730g00009 93 SMART ring_2 32 69 IPR001841 -
Pral2730g00009 93 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 80 IPR013083 -
Pral2730g00009 93 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 3 93 IPR044235 GO:0061630|GO:1904294
Pral2730g00009 93 SUPERFAMILY RING/U-box 22 75 - -
Pral2730g00009 93 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Pral2730g00009 93 ProSiteProfiles Zinc finger RING-type profile. 32 70 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2730g00009 Pral-Chr2730 36054 38756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2730g00009 6 93 C3H Transcription Factor Family AT5G01960 85.227 7.14e-57 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2730g00009 - K22379 qsa:O6P43_020068 176.792