Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2727g00002 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTGATCCAGTTTTCCAGGAGTCCGGATCCTCAGAACCACCAAAGCAAGATCTCAGAAGATCCGATTCTGGATGATTATGCTTCTCCTCGTGTCAGCAATTCAGATAAAAAAATTGGTAACACCGCAAGAGGGAATATACTTTCTCAGGCTATTAGCAATAATAATAGTCCCAACGAAAACAAGAAGAAGAAGATGATTCACAGAGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTTCCCTTTATGCTTCCCTCAGATCCCTTCTTCCTCTTGAGTACATCAAGGGAAAGCGATCGATATCAGATCACATGAATGAGGCAGTGACTTATATAAAGCACCTACAGAAGAAAATTAAAGAACTTGGCGATAAGAGAGATGAACTGAAGAAACACTCATCAGATAATTCTAACTTGGAGACCCCAGATGAGGGCCAACAGAAATCGGTAAGCTTCACTGTCCATGAGAATAATGGTGTTGTGGGAATCGAAATTATCAGTAACTTCAAAGACGAAAGGTTCTCAGTCTCAAAGTTGCTGGAATTACTGCTTGAAGAAGGGCTTGAAGTTGTTACTTGTCTCTTCACACAAGTCAATGGTAGAATACTTCATAGTCTCCACTGCGAGGTTAACTGTTCCAATAGTGTAGATCTATCTGAGCTGAGAAGGAAAATTGCAAGTTTCATTTCCTAG 720 0.4097 MFPLQRGNELVIQFSRSPDPQNHQSKISEDPILDDYASPRVSNSDKKIGNTARGNILSQAISNNNSPNENKKKKMIHREIERQRRQEMASLYASLRSLLPLEYIKGKRSISDHMNEAVTYIKHLQKKIKELGDKRDELKKHSSDNSNLETPDEGQQKSVSFTVHENNGVVGIEIISNFKDERFSVSKLLELLLEEGLEVVTCLFTQVNGRILHSLHCEVNCSNSVDLSELRRKIASFIS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2727g00002 239 Gene3D - 62 151 IPR036638 GO:0046983
Pral2727g00002 239 Coils Coil 121 141 - -
Pral2727g00002 239 MobiDBLite consensus disorder prediction 13 27 - -
Pral2727g00002 239 CDD bHLH_AtORG2_like 73 149 - -
Pral2727g00002 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 141 IPR036638 GO:0046983
Pral2727g00002 239 MobiDBLite consensus disorder prediction 13 50 - -
Pral2727g00002 239 Pfam Helix-loop-helix DNA-binding domain 73 125 IPR011598 GO:0046983
Pral2727g00002 239 SMART finulus 78 130 IPR011598 GO:0046983
Pral2727g00002 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 124 IPR011598 GO:0046983
Pral2727g00002 239 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 62 237 - -
Pral2727g00002 239 MobiDBLite consensus disorder prediction 136 159 - -
Pral2727g00002 239 FunFam Transcription factor bHLH126 64 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2727g00002 Pral-Chr2727 35796 37052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2727g00002 77 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 43.713 9.26e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2727g00002 HLH 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2727g00002 - - gmx:100780888 265.388