Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2714g00003 ATGTCATCCTCTTCTACTACTGCTGCCTCTACCTTATCTCAGCTGGACCACTTCCCTCCTTCAGACCAGCTTTGTTATGTCCACTGCAACCTTTGTGACACTGTCCTCGCTGTGAGTGTTCCTTGCACGAGCTTGTTCAAGACAGTGACCGTGAGATGTGGGCATTGCACCAACCTTCTTCCAGTGATCGTGAACATGAGAGGACTGCTTCTGCCATCAGCAAATCAATTTCACCTATCCAACTCTTTCTTCTCTCCTCCTCCGTCGTCTCTTAACCTCCTGGAGGAGATGCCAAACTCATCAAATCACTACTTCTCTGTGCCTCCTGCTCCTAGGGTTGCGGCAGCTGAAGAGCTTCCACGCCCACCCCTCGTAAATAGACCCCCTGAGAAGAGGCAGAGAGTCCCATCTGCCTACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGCAAATCCTGATATAACCCACAGAGAAGCCTTCAGCGCAGCTGCCAAGAATTGGGCCCACTTCCCTCACATACACTATGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGCGCCAGCAGGAAGGAGACGACGACGACGTTCGCATGAAAAAAGATGGCCTTTTCATCTCTTCAGCAAATCTTGGGGTTCCTCCCTATTAA 663 0.5023 MSSSSTTAASTLSQLDHFPPSDQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVIVNMRGLLLPSANQFHLSNSFFSPPPSSLNLLEEMPNSSNHYFSVPPAPRVAAAEELPRPPLVNRPPEKRQRVPSAYNRFIKDEIQRIKSANPDITHREAFSAAAKNWAHFPHIHYGLMPDQTVKKTNVRQQEGDDDDVRMKKDGLFISSANLGVPPY 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2714g00003 220 Pfam YABBY protein 20 180 IPR006780 GO:0007275
Pral2714g00003 220 CDD HMG-box_SF 134 170 - -
Pral2714g00003 220 FunFam Axial regulator YABBY 125 196 - -
Pral2714g00003 220 Gene3D High mobility group box domain 124 194 IPR036910 -
Pral2714g00003 220 PANTHER PROTEIN YABBY 6-RELATED 1 192 IPR006780 GO:0007275
Pral2714g00003 220 SUPERFAMILY HMG-box 124 174 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2714g00003 Pral-Chr2714 35311 38289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2714g00003 31 217 C2C2-YABBY Transcription Factor Family AT4G00180 57.619 8.03e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pral2714g00003 YABBY 1.9e-68 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2714g00003 K25796 - cave:132176469 310.071