Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2708g00009 ATGCAAGAGCCGATCATGGTCGACAAAGGAGAGGAGGCCCTGGATTTGCCTCCGGGTTTCAGATTTCATCCCACGGACGAGGAGATCATCACTTGCTACCTTACGGAGAAGGTCTTGAATAGCAGTTTCAGTGCAACTGCTATTGGTGAAGCTGATCTGAACAAGTGCGAACCTTGGGATCTCCCTAAGAGAGCGAGGATGGGGGAGAAAGAGTGGTACTTCTTCTGTCAAAGAGACAGGAAGTATCCGACGGGGACGAGGACGAATAGGGCGACGGATTCTGGGTACTGGAAGGCCACCGGAAAAGATAAGGAGATTTACAGAGGCAAAGGGAACCTCGTGGGGATGAAGAAGACCCTCGTCTTCTACGGAGGGAGAGCTCCTAAAGGCGAGAAGACTGGCTGGGTTATGCATGAGTTCCGATTGGAAGGAAAATTCGCCGCTTATAACCTTCCCAAGGCCGCTAAGGATGAATGGGTGGTGTGCAAGATTTTCCACAAGAACACAGACGTCAAAAAGCCCCCTATTATTCCTGAGCTTCTAAGGATCAACTCTTTCGGAGACCATCTGCCGGATTTCTCTCCGTCGCTCCCGCCTCTCATGGATCCAGCTTGCTTCAGTAACGCCGAACAGCCTGGCTACAGTGGCGGCGATGGATTCAAGGTGGCCAACCAGCAGCCGTCATGGGACGGTTATTATCTCTCCAACTTCGCCCGCAACGACCATCTCAGTAATCAGACGGCGTTGGTGAAGGCAGAAGAAGACTGCAGAAACTACGAGATGATCCCCGCTTATCCTCCCTCGCAACCTCGGATAGGAGTCATCCAGAATCCCAGTATGTGCCTTCAGCAGAATGTTGTGTCAGATTTCAGGAACAGAGATGTCGGAGGGGTTGTGAAGAATGAAAACGTGTCGTGGGGAATGGATAAACAGTGCAATATGGAGCATTCGATGGCGAGTGTGTCGCGGGATACCGGGCTTAGCAGTGACAGGAACGCCGAAACTTCATCGGCGGTGTCCGTGAGGCGAGACATCACCGGAAGGAATAAGACAGTGTACGAGGATGATTTCATCCAGACTCCATCACTTGGTCCCCTTCCAGATTTGGATTGCCTCTGGGATGACTACTGA 1131 0.5181 MQEPIMVDKGEEALDLPPGFRFHPTDEEIITCYLTEKVLNSSFSATAIGEADLNKCEPWDLPKRARMGEKEWYFFCQRDRKYPTGTRTNRATDSGYWKATGKDKEIYRGKGNLVGMKKTLVFYGGRAPKGEKTGWVMHEFRLEGKFAAYNLPKAAKDEWVVCKIFHKNTDVKKPPIIPELLRINSFGDHLPDFSPSLPPLMDPACFSNAEQPGYSGGDGFKVANQQPSWDGYYLSNFARNDHLSNQTALVKAEEDCRNYEMIPAYPPSQPRIGVIQNPSMCLQQNVVSDFRNRDVGGVVKNENVSWGMDKQCNMEHSMASVSRDTGLSSDRNAETSSAVSVRRDITGRNKTVYEDDFIQTPSLGPLPDLDCLWDDY 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2708g00009 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 276 - -
Pral2708g00009 376 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Pral2708g00009 376 SUPERFAMILY NAC domain 12 168 IPR036093 GO:0003677|GO:0006355
Pral2708g00009 376 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Pral2708g00009 376 FunFam NAC domain-containing protein 100-like 25 171 - -
Pral2708g00009 376 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2708g00009 Pral-Chr2708 34473 36498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2708g00009 5 341 NAC Transcription Factor Family AT5G18270 51.744 1.25e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral2708g00009 NAM 5.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2708g00009 - - pcin:129284658 617.461