Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2708g00006 ATGGTGAACCCAATGAGGGAAGGAGAGAACAAATGCCCAGTTTGTGGGTCAGAATTTACAGAGGCAATAATGGAGAGTCTGAGATCAGAGCATAACGAAGGCAGCGATTTGATCAGATCAGCCTCTGTATTCTCTCTTTACGCGCCAATATTACTGGGCTTGATGAGTGCTCTCAGACCTGCTTTAGCAACCGTCAGCAATAATAACAACATCGATGGTTTAAGTTCAAGGGAGGGGGAAGACGACGAGCAAGAGGTGGAACAGCGCAGTGACCTTGTGGTGAGAAGAAGAAGGCGAAGAAGAGCATCGTCCACTTCTCTCATGCTGGTCTTTCGTCGTGTCCACGATAGGACGGGCCAGCCAGAATCTGATCAGAATACTAACACAGAAAACAACCATAGAAACAATAACGGTGGTGATAGCAATAATAACGTGAACCTCAACGTGGTTGTGATTGATCCGTTCAACGAAGAGGCTTTGATTCTGCGAGGTCCTTCACTGATTAACAACGCTACGAGTACTACTCCGTTGATCGAGAATCCGATGGGGTCTCTAGGTGACTTTCTGGAGGGGCCTGGGTTTGGGTTGTTGCTGCAACATTTGACGCAGAATCATGAACCTAATAGATATGTGAATAACGTGAACCCGCCGGCACAGAAGGCGGCGATAGAAGCAATGCCGACGGTGATCACGGTGGAGAACATGCGGTGCATAATATGTTTGGAGGATGCAGAGATTGGGAGTGAAGTGAAGGAGATGCCGTGTGGGCATAAGTTTCACAGTGACTGCATTATCTCGTGGCTGAAACTTCGGAGTTCTTGCCCGGTTTGTAGGTTTCAGATGCCGTCCGACGCTTCCAAGGTTGAAGTCAACGGTGGACGTCGGAATGAAGGCGATCCGAGCAATGATCAAGTGATGGATAGAGAACAGAGGATGAGTTTTGGAAGAAGGAACTGGCTTTCCATATTGCAGCCATTCGATTACTTTCTTCCTTCTCCTTGA 1002 0.479 MVNPMREGENKCPVCGSEFTEAIMESLRSEHNEGSDLIRSASVFSLYAPILLGLMSALRPALATVSNNNNIDGLSSREGEDDEQEVEQRSDLVVRRRRRRRASSTSLMLVFRRVHDRTGQPESDQNTNTENNHRNNNGGDSNNNVNLNVVVIDPFNEEALILRGPSLINNATSTTPLIENPMGSLGDFLEGPGFGLLLQHLTQNHEPNRYVNNVNPPAQKAAIEAMPTVITVENMRCIICLEDAEIGSEVKEMPCGHKFHSDCIISWLKLRSSCPVCRFQMPSDASKVEVNGGRRNEGDPSNDQVMDREQRMSFGRRNWLSILQPFDYFLPSP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2708g00006 333 MobiDBLite consensus disorder prediction 66 90 - -
Pral2708g00006 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 116 282 - -
Pral2708g00006 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 284 IPR013083 -
Pral2708g00006 333 MobiDBLite consensus disorder prediction 121 145 - -
Pral2708g00006 333 SMART ring_2 237 277 IPR001841 -
Pral2708g00006 333 SUPERFAMILY RING/U-box 226 284 - -
Pral2708g00006 333 FunFam E3 ubiquitin-protein ligase RNF181 206 284 - -
Pral2708g00006 333 Pfam Ring finger domain 236 278 IPR001841 -
Pral2708g00006 333 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Pral2708g00006 333 CDD RING-H2_PA-TM-RING 237 278 - -
Pral2708g00006 333 MobiDBLite consensus disorder prediction 110 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2708g00006 Pral-Chr2708 15589 16590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2708g00006 149 299 C3H Transcription Factor Family AT1G26800 34.868 4.32e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2708g00006 - K11982 pcin:129291269 528.094