Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2706g00039 ATGTCACATCCGAGGCAATTCCAGATGGTGGGTGGTGCTAACAATCCTGGGCATTACAATGACACAACTTTTACTAAAATCTTTGTTGGTGGATTGGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGTGAGATCCTTGAGGCTGTTGTTATCACAGACAAGAACACAGGGAGATCCAAGGGTTATGGCTTTGTTACATTTAAGGATCCAGAAGCAGCCATGAGAGCATGTCAGAATCCGTCTCCGGTTATTGATGGGAGAAGAGCAAACTGCAATCTTGCATCTCTTGGAGCAAACAAAAATCGCCCACCAACTCCTCAACATGGAGCAGGAAGGTTCAGACCAGGACCTGGACTAGTGGCTACACCCGCATACCATGGCTCTTCCTCTACATTTTTCCATCAGCCCTCTGGCCAATATACATTTCCTTATTCAGCTTACGGGTATTCTGGATATTCACAAGACACCATGTATCCCATGAACTATTATGGTGTGTATGGAGGTCAGCAATTTTCACCGTATTACCCATCCAGTGGGGCATCTGGGCCACCAGGACTGGTCCATAATATTTACCCTTTCTATGCTCAATATGCTCAGACTAGCCAGGCTCAAGGTTTTGGACTTCAATATCCTCAAATGCTACAGTTCCCCCTTCTGCCTCAGCAATATGGCTCCACCGGGATCCTCTCTTTTCCTTCTTCAGTGCCAATGTCAACTACTACAACTAGTGCAGTTGCAACAACAGCCACCACAACAGCAGCAACAGCGACAGCATCAACAACAGTAGCAGCGACAACTGGGGCAGGTTCTTCACAAGCTTCTGGAACAGCTTCTGAACAAAAATCTTCAACTTAG 873 0.4639 MSHPRQFQMVGGANNPGHYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTPQHGAGRFRPGPGLVATPAYHGSSSTFFHQPSGQYTFPYSAYGYSGYSQDTMYPMNYYGVYGGQQFSPYYPSSGASGPPGLVHNIYPFYAQYAQTSQAQGFGLQYPQMLQFPLLPQQYGSTGILSFPSSVPMSTTTTSAVATTATTTAATATASTTVAATTGAGSSQASGTASEQKSST 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2706g00039 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Pral2706g00039 290 SUPERFAMILY RNA-binding domain, RBD 19 124 IPR035979 GO:0003676
Pral2706g00039 290 FunFam RNA-binding protein 24-B isoform X1 12 118 - -
Pral2706g00039 290 CDD RRM_RBM24_RBM38_like 25 100 - -
Pral2706g00039 290 PANTHER BOULE-RELATED 15 277 - -
Pral2706g00039 290 MobiDBLite consensus disorder prediction 266 290 - -
Pral2706g00039 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
Pral2706g00039 290 SMART rrm1_1 26 98 IPR000504 GO:0003723
Pral2706g00039 290 Gene3D - 3 118 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2706g00039 Pral-Chr2706 205563 207890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2706g00039 21 101 C2H2 Transcription Factor Family AT2G19380 44.444 3.87e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2706g00039 - - qsu:111994039 439.113